SNP Profiles of IMC-14   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AACCCTAAGGAGCCCCCTCCGGTTCCTT
1._GC-03-030-3-09
AACCCTAAGGAGCCCCCTCCGGTTCCTT
2._GC-03-030-3-09
AACCCTAAGGAGCCCCCTCCGGTTCCTT
3._GC-03-030-3-09
AACCCTAAGGAGCCCCCTCCGGTTCCTT
4._GC-03-030-3-09
AACCCTAAGGAGCCCCCTCCGGTTCCTT
5._GC-03-030-3-09
AACCCTAAGGAGCCCCCTCCGGTTCCTT
6._GC-03-030-3-09
AACCCTAAGGAGCCCCCTCCGGTTCCTT
7._GC-03-030-3-09
AACCCTAAGGAGCCCCCTCCGGTTCCTT
8._GC-03-030-3-09
AACCCTAAGGAGCCCCCTCCGGTTCCTT
9._GC-04-054-3-18
AACCCTAAGGAGCCCCCTCCGGTTCCTT
10._GC-03-030-3-09
AA_CTAAGGAGCCCCCTCCGGTTCCTT
11._GC-03-030-3-09
AA_CTAAGG_CCCCCTCCGGTTCCTT
12._GC-03-030-3-09
AA_CTAAGGAGCCCCCTCCGGTTCCTT
13._IMC_14
AACCCTAA____CTCCGG_CC_
14._IMC_14
AACCCTAA____CTCCGG_CC_
15._IMC_14
AACCCTAA____CTCCGG_CC_
16._IMC_14
AACCCTAA____CTCCGG_CC_
17._IMC_14
AACCCTAA____CTCCGG_CC_
18._IMC_14
AACCCTAA____CTCCGG_CC_
19._IMC_14
AACCCTAA____CTCCGG_CC_
20._IMC_14
AACCCTAA____CTCCGG_CC_
21._IMC_14
AACCCTAA____CTCCGG_CC_
22._IMC_14
AACCCTAA____CTCCGG_CC_
23._IMC_14
AA_CTAA____CTCCGG_CC_
24._IMC_14
AA_CTAA____CTCCGG_CC_
25._IMC_14
AA_CTAA____CTCCGG_CC_
26._IMC_14
AACCCTAA____CTCCGG_CC_
27._RUQ_1634
__CTAA__TT_CT__TTCC_
28._RUQ_1634
___AA__TT_______
29._RUQ_1634
AAAACTCC____CTCTGG_CC_
30._GC-03-30-3-9
AACC_AAGGAG_GGAG_GGAAGGAA
31._RUQ_1634
AACC_AAGGAG_GGAG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAGGCGCCGGCCAAGGTTAACCCCAA
1._GC-03-030-3-09
AAAAGGCGCCGGCCAAGGTTAACCCCAA
2._GC-03-030-3-09
AAAAGGCGCCGGCCAAGGTTAACCCCAA
3._GC-03-030-3-09
AAAAGGCGCCGGCCAAGGTTAACCCCAA
4._GC-03-030-3-09
AAAAGGCGCCGGCCAAGGTTAACCCCAA
5._GC-03-030-3-09
AAAAGGCGCCGGCCAAGGTTAACCCCAA
6._GC-03-030-3-09
AAAAGGCGCCGGCCAAGGTTAACCCCAA
7._GC-03-030-3-09
AAAAGGCGCCGGCCAAGGTTAACCCCAA
8._GC-03-030-3-09
AAAAGGCGCCGGCCAAGGTTAACCCCAA
9._GC-04-054-3-18
AAAAGGCGCCGGCCAAGGTTAACCCCAA
10._GC-03-030-3-09
AAAAGGCGCCGGCCAAGGTTAACCCCAA
11._GC-03-030-3-09
AAAAGG_CCGGCCAAGGTTAACCCCAA
12._GC-03-030-3-09
AAAAGGCGCCGGCCAAGGTTAACCCCAA
13._IMC_14
__GG__GG___TTAA_CCAA
14._IMC_14
__GG__GG___TTAA_CCAA
15._IMC_14
__GG__GG___TTAA_CCAA
16._IMC_14
__GG__GG___TTAA_CCAA
17._IMC_14
__GG__GG___TTAA_CCAA
18._IMC_14
__GG__GG___TTAA_CCAA
19._IMC_14
__GG__GG___TTAA_CCAA
20._IMC_14
__GG__GG___TTAA_CCAA
21._IMC_14
__GG__GG___TTAA_CCAA
22._IMC_14
__GG__GG___TTAA_CCAA
23._IMC_14
__GG__GG___TTAA_CCAA
24._IMC_14
__GG__GG___TTAA_CCAA
25._IMC_14
__GG__GG___TTAA_CCAA
26._IMC_14
__GG__GG___TTAA_CCAA
27._RUQ_1634
____CC___GG_AACCCC_
28._RUQ_1634
__GGTT________CC_
29._RUQ_1634
__AA__GG___TTAA_GGAA
30._GC-03-30-3-9
TTAAGGCG_GGGGAAGGTTAAGGGGAA
31._RUQ_1634
TTAAGGCG_GGGGAAGGTTAAGGGGAA
 2930313233343536373839404142
_Input profile
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
1._GC-03-030-3-09
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
2._GC-03-030-3-09
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
3._GC-03-030-3-09
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
4._GC-03-030-3-09
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
5._GC-03-030-3-09
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
6._GC-03-030-3-09
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
7._GC-03-030-3-09
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
8._GC-03-030-3-09
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
9._GC-04-054-3-18
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
10._GC-03-030-3-09
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
11._GC-03-030-3-09
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
12._GC-03-030-3-09
TTGGGGGGCCAAGTGGTTAGCCGGCCGG
13._IMC_14
___GG_AAGT__AG____
14._IMC_14
___GG_AAGT__AG____
15._IMC_14
___GG_AAGT__AG____
16._IMC_14
___GG_AAGT__AG____
17._IMC_14
___GG_AAGT__AG____
18._IMC_14
___GG_AAGT__AG____
19._IMC_14
___GG_AAGT__AG____
20._IMC_14
___GG_AAGT__AG____
21._IMC_14
___GG_AAGT__AG____
22._IMC_14
___GG_AAGT__AG____
23._IMC_14
___GG_AAGT__AG____
24._IMC_14
___GG_AAGT__AG____
25._IMC_14
___GG_AAGT__AG____
26._IMC_14
___GG_AAGT__AG____
27._RUQ_1634
__GGGGCCAAGT__AGCC__GG
28._RUQ_1634
___GG_AA____CC___
29._RUQ_1634
___CC_AGGT__AG____
30._GC-03-30-3-9
AACCGGGGCCAAACCCAAAGGGGGGGCC
31._RUQ_1634
AACCGGGGCCAAACCCAAAGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
1._GC-03-030-3-09
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
2._GC-03-030-3-09
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
3._GC-03-030-3-09
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
4._GC-03-030-3-09
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
5._GC-03-030-3-09
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
6._GC-03-030-3-09
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
7._GC-03-030-3-09
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
8._GC-03-030-3-09
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
9._GC-04-054-3-18
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
10._GC-03-030-3-09
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
11._GC-03-030-3-09
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
12._GC-03-030-3-09
TTTTAGCCCCGGAGTTCTCCTTGGCGTT
13._IMC_14
_TT______CTCC__CGTT
14._IMC_14
_TT______CTCC__CGTT
15._IMC_14
_TT______CTCC__CGTT
16._IMC_14
_TT______CTCC__CGTT
17._IMC_14
_TT______CTCC__CGTT
18._IMC_14
_TT______CTCC__CGTT
19._IMC_14
_TT______CTCC__CGTT
20._IMC_14
_TT______CTCC__CGTT
21._IMC_14
_TT______CTCC__CGTT
22._IMC_14
_TT______CTCC__CGTT
23._IMC_14
_TT______CTCC__CGTT
24._IMC_14
_TT______CTCC__CGTT
25._IMC_14
_TT______CTCC__CGTT
26._IMC_14
_TT______CTCC___TT
27._RUQ_1634
TT_AG_____CT_TT-CGTT
28._RUQ_1634
__AG________GG__
29._RUQ_1634
_CC______CTCT__CCCT
30._GC-03-30-3-9
_AAAGGG_GGAGAAAGGGAAGGCGAA
31._RUQ_1634
_AAAGGG_GGAGAAAGGGAAGGCGAA
 5758596061626364656667686970
_Input profile
AAGGGGACAGGGGGGGTTCCCCAAAAAC
1._GC-03-030-3-09
AAGGGGACAGGGGGGGTTCCCCAAAAAC
2._GC-03-030-3-09
AAGGGGACAGGGGGGGTTCCCCAAAAAC
3._GC-03-030-3-09
AAGGGGACAGGGGGGGTTCCCCAAAAAC
4._GC-03-030-3-09
AAGGGGACAGGGGGGGTTCCCCAAAAAC
5._GC-03-030-3-09
AAGGGGACAGGGGGGGTTCCCCAAAAAC
6._GC-03-030-3-09
AAGGGGACAGGGGGGGTTCCCCAAAAAC
7._GC-03-030-3-09
AAGGGGACAGGGGGGGTTCCCCAAAAAC
8._GC-03-030-3-09
AAGGGGACAGGGGGGGTTCCCCAAAAAC
9._GC-04-054-3-18
AAGGGGACAGGGGGGGTTCCCCAAAAAC
10._GC-03-030-3-09
AAGGGGACAGGGGGGGTTCCCCAA_AC
11._GC-03-030-3-09
AAGGGGACAGGGGGGGTTCCCCAAAAAC
12._GC-03-030-3-09
AAGGGGACAGGGGGGGTTCCCCAA_AC
13._IMC_14
AAGG_ACAGGGGG___CC___
14._IMC_14
AAGG_ACAGGGGG___CC___
15._IMC_14
AAGG_ACAGGGGG___CC___
16._IMC_14
AAGG_ACAGGGGG___CC___
17._IMC_14
AAGG_ACAGGGGG___CC___
18._IMC_14
AAGG_ACAGGGGG___CC___
19._IMC_14
AAGG_ACAGGGGG___CC___
20._IMC_14
AAGG_ACAGGGGG___CC___
21._IMC_14
AAGG_ACAGGGGG___CC___
22._IMC_14
AAGG_ACAGGGGG___CC___
23._IMC_14
AAGG_ACAGGGGG___CC___
24._IMC_14
AAGG_ACAGGGGG___CC___
25._IMC_14
AAGG_ACAGGGGG___CC___
26._IMC_14
ACGG_ACAGGGGG___CC___
27._RUQ_1634
AC_GGACAGGGGGGG______
28._RUQ_1634
___ACAG_GGGG______
29._RUQ_1634
ACGG_CCAATTGG___TT___
30._GC-03-30-3-9
ACGGGGACAGCCCCGG__GGAAAAAC
31._RUQ_1634
ACGGGGACAGCCCCGG__GGAAAAAC
 7172737475767778798081828384
_Input profile
CCCGCCATCCTTCCCTAACCTTTTATGG
1._GC-03-030-3-09
CCCGCCATCCTTCCCTAACCTTTTATGG
2._GC-03-030-3-09
CCCGCCATCCTTCCCTAACCTTTTATGG
3._GC-03-030-3-09
CCCGCCATCCTTCCCTAACCTTTTATGG
4._GC-03-030-3-09
CCCGCCATCCTTCCCTAACCTTTTATGG
5._GC-03-030-3-09
CCCGCCATCCTTCCCTAACCTTTTATGG
6._GC-03-030-3-09
CCCGCCATCCTTCCCTAACCTTTTATGG
7._GC-03-030-3-09
CCCGCCATCCTTCCCTAACCTTTTATGG
8._GC-03-030-3-09
CCCGCCATCCTTCCCTAACCTTTTATGG
9._GC-04-054-3-18
CCCGCCATCCTTCCCTAACCTTTTATGG
10._GC-03-030-3-09
CCCGCCATCCTTCCCTAACCTTTTATGG
11._GC-03-030-3-09
CCCGCCATCCTTCCCTAACCTTTTATGG
12._GC-03-030-3-09
CCCGCCATCC_CCCTAACCTTTTATGG
13._IMC_14
CCCG__CCTTCC_AA_TTTT__
14._IMC_14
CCCG__CCTTCC_AA_TTTT__
15._IMC_14
CCCG__CCTTCC_AA_TTTT__
16._IMC_14
CCCG__CCTTCC_AA_TTTT__
17._IMC_14
CCCG__CCTTCC_AA_TTTT__
18._IMC_14
CCCG__CCTTCC_AA_TTTT__
19._IMC_14
CCCG__CCTTCC_AA_TTTT__
20._IMC_14
CCCG__CCTTCC_AA_TTTT__
21._IMC_14
CCCG__CCTTCC_AA_TTTT__
22._IMC_14
CCCG__CCTTCC_AA_TTTT__
23._IMC_14
CCCG__CCTTCC_AA_TTTT__
24._IMC_14
CCCG__CCTTCC_AA_TTTT__
25._IMC_14
CCCG__CC_CC_AA_TTTT__
26._IMC_14
CCCG__CCTT__AA_TTTT__
27._RUQ_1634
CCCG__CC___AACCTT___
28._RUQ_1634
CCCG____CC__CC____
29._RUQ_1634
CC___CTCTCT_AG_CTTT__
30._GC-03-30-3-9
CCCGGGATGGAA_AG__AAAAATGG
31._RUQ_1634
CCCGGGATGGAA_AG__AAAAATGG

Input profile: IMC_14 GC-03-030-3-09

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

1._IMC_14 GC-03-030-3-09

identical
84 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_14 GC-03-030-3-09

identical
84 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._IMC_14 GC-03-030-3-09

identical
84 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._IMC_14 GC-03-030-3-09

identical
84 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._IMC_14 GC-03-030-3-09

identical
84 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._IMC_14 GC-03-030-3-09

identical
84 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._IMC_14 GC-03-030-3-09

identical
84 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

8._IMC_14 GC-03-030-3-09

identical
84 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

9._IMC_14 GC-04-054-3-18

identical
84 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

10._IMC_14 GC-03-030-3-09

identical
82 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

11._IMC_14 GC-03-030-3-09

identical
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._IMC_14 GC-03-030-3-09

identical
81 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

13._IMC_14

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

14._IMC_14

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

15._IMC_14

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

16._IMC_14

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

17._IMC_14

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

18._IMC_14

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

19._IMC_14

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

20._IMC_14

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

21._IMC_14

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

22._IMC_14

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

23._IMC_14

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

24._IMC_14

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

25._IMC_14

identical
36 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

26._IMC_14

98.6 %
36 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

27._IMC_14 RUQ_1634

96.1 %
38 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._IMC_14 RUQ_1634

88.9 %
18 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

29._IMC_14 RUQ_1634

60.8 %
37 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

54.1 %
73 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

54.1 %
73 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP329
46TcSNP944 47TcSNP1242 48TcSNP1383 49TcSNP547 50TcSNP776
51TcSNP151 52TcSNP1520 53TcSNP799 54TcSNP899 55TcSNP226
56TcSNP1442 57TcSNP193 58TcSNP25 59TcSNP364 60TcSNP144
61TcSNP230 62TcSNP560 63TcSNP723 64TcSNP731 65TcSNP701
66TcSNP1041 67TcSNP917 68Tcm003s01336581 69Tcm003s07402719 70Tcm006s26664133
71TcSNP529 72TcSNP1458 73TcSNP60 74TcSNP430 75TcSNP619
76TcSNP994 77TcSNP1144 78TcSNP1156 79TcSNP469 80TcSNP999
81TcSNP242 82TcSNP1414 83TcSNP154 84TcSNP240