SNP Profiles of IMC-14   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AACTAAGGAGCCCCCTCCGGTTCCTTAA
1._GC-03-030-3-09
AACTAAGGAGCCCCCTCCGGTTCCTTAA
2._GC-03-030-3-09
AACTAAGGAGCCCCCTCCGGTTCCTTAA
3._GC-03-030-3-09
AACTAAGGAGCCCCCTCCGGTTCCTTAA
4._GC-03-030-3-09
AACTAAGGAGCCCCCTCCGGTTCCTTAA
5._GC-03-030-3-09
AACTAAGGAGCCCCCTCCGGTTCCTTAA
6._GC-03-030-3-09
AACTAAGGAGCCCCCTCCGGTTCCTTAA
7._GC-03-030-3-09
AACTAAGGAGCCCCCTCCGGTTCCTTAA
8._GC-03-030-3-09
AACTAAGGAGCCCCCTCCGGTTCCTTAA
9._GC-03-030-3-09
AACTAAGGAGCCCCCTCCGGTTCCTTAA
10._GC-03-030-3-09
AACTAAGGAGCCCCCTCCGGTTCCTTAA
11._GC-04-054-3-18
AACTAAGGAGCCCCCTCCGGTTCCTTAA
12._GC-03-030-3-09
AACTAAGG_CCCCCTCCGGTTCCTTAA
13._IMC_14
AACTAA____CTCCGG_CC__
14._IMC_14
AACTAA____CTCCGG_CC__
15._IMC_14
AACTAA____CTCCGG_CC__
16._IMC_14
AACTAA____CTCCGG_CC__
17._IMC_14
AACTAA____CTCCGG_CC__
18._IMC_14
AACTAA____CTCCGG_CC__
19._IMC_14
AACTAA____CTCCGG_CC__
20._IMC_14
AACTAA____CTCCGG_CC__
21._IMC_14
AACTAA____CTCCGG_CC__
22._IMC_14
AACTAA____CTCCGG_CC__
23._IMC_14
AACTAA____CTCCGG_CC__
24._IMC_14
AACTAA____CTCCGG_CC__
25._IMC_14
AACTAA____CTCCGG_CC__
26._IMC_14
AACTAA____CTCCGG_CC__
27._RUQ_1634
_CTAA__TT_CT__TTCC__
28._RUQ_1634
__AA__TT________
29._RUQ_1634
AACTCC____CTCTGG_CC__
30._GC-03-30-3-9
AA_AAGGAG_GGAG_GGAAGGAATT
31._RUQ_1634
AA_AAGGAG_GGAG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
AAGGCGCCGGCCAAGGTTAACCCCAATT
1._GC-03-030-3-09
AAGGCGCCGGCCAAGGTTAACCCCAATT
2._GC-03-030-3-09
AAGGCGCCGGCCAAGGTTAACCCCAATT
3._GC-03-030-3-09
AAGGCGCCGGCCAAGGTTAACCCCAATT
4._GC-03-030-3-09
AAGGCGCCGGCCAAGGTTAACCCCAATT
5._GC-03-030-3-09
AAGGCGCCGGCCAAGGTTAACCCCAATT
6._GC-03-030-3-09
AAGGCGCCGGCCAAGGTTAACCCCAATT
7._GC-03-030-3-09
AAGGCGCCGGCCAAGGTTAACCCCAATT
8._GC-03-030-3-09
AAGGCGCCGGCCAAGGTTAACCCCAATT
9._GC-03-030-3-09
AAGGCGCCGGCCAAGGTTAACCCCAATT
10._GC-03-030-3-09
AAGGCGCCGGCCAAGGTTAACCCCAATT
11._GC-04-054-3-18
AAGGCGCCGGCCAAGGTTAACCCCAATT
12._GC-03-030-3-09
AAGG_CCGGCCAAGGTTAACCCCAATT
13._IMC_14
_GG__GG___TTAA_CCAA_
14._IMC_14
_GG__GG___TTAA_CCAA_
15._IMC_14
_GG__GG___TTAA_CCAA_
16._IMC_14
_GG__GG___TTAA_CCAA_
17._IMC_14
_GG__GG___TTAA_CCAA_
18._IMC_14
_GG__GG___TTAA_CCAA_
19._IMC_14
_GG__GG___TTAA_CCAA_
20._IMC_14
_GG__GG___TTAA_CCAA_
21._IMC_14
_GG__GG___TTAA_CCAA_
22._IMC_14
_GG__GG___TTAA_CCAA_
23._IMC_14
_GG__GG___TTAA_CCAA_
24._IMC_14
_GG__GG___TTAA_CCAA_
25._IMC_14
_GG__GG___TTAA_CCAA_
26._IMC_14
_GG__GG___TTAA_CCAA_
27._RUQ_1634
___CC___GG_AACCCC__
28._RUQ_1634
_GGTT________CC__
29._RUQ_1634
_AA__GG___TTAA_GGAA_
30._GC-03-30-3-9
AAGGCG_GGGGAAGGTTAAGGGGAAAA
31._RUQ_1634
AAGGCG_GGGGAAGGTTAAGGGGAAAA
 2930313233343536373839404142
_Input profile
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
1._GC-03-030-3-09
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
2._GC-03-030-3-09
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
3._GC-03-030-3-09
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
4._GC-03-030-3-09
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
5._GC-03-030-3-09
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
6._GC-03-030-3-09
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
7._GC-03-030-3-09
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
8._GC-03-030-3-09
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
9._GC-03-030-3-09
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
10._GC-03-030-3-09
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
11._GC-04-054-3-18
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
12._GC-03-030-3-09
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
13._IMC_14
__GG_AAGT__AG_____
14._IMC_14
__GG_AAGT__AG_____
15._IMC_14
__GG_AAGT__AG_____
16._IMC_14
__GG_AAGT__AG_____
17._IMC_14
__GG_AAGT__AG_____
18._IMC_14
__GG_AAGT__AG_____
19._IMC_14
__GG_AAGT__AG_____
20._IMC_14
__GG_AAGT__AG_____
21._IMC_14
__GG_AAGT__AG_____
22._IMC_14
__GG_AAGT__AG_____
23._IMC_14
__GG_AAGT__AG_____
24._IMC_14
__GG_AAGT__AG_____
25._IMC_14
__GG_AAGT__AG_____
26._IMC_14
__GG_AAGT__AG_____
27._RUQ_1634
_GGGGCCAAGT__AGCC__GGTT
28._RUQ_1634
__GG_AA____CC____
29._RUQ_1634
__CC_AGGT__AG_____
30._GC-03-30-3-9
CCGGGGCCAAACCCAAAGGGGGGGCC_
31._RUQ_1634
CCGGGGCCAAACCCAAAGGGGGGGCC_
 4344454647484950515253545556
_Input profile
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
1._GC-03-030-3-09
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
2._GC-03-030-3-09
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
3._GC-03-030-3-09
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
4._GC-03-030-3-09
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
5._GC-03-030-3-09
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
6._GC-03-030-3-09
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
7._GC-03-030-3-09
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
8._GC-03-030-3-09
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
9._GC-03-030-3-09
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
10._GC-03-030-3-09
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
11._GC-04-054-3-18
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
12._GC-03-030-3-09
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
13._IMC_14
TT______CTCC__CGTTAA
14._IMC_14
TT______CTCC__CGTTAA
15._IMC_14
TT______CTCC__CGTTAA
16._IMC_14
TT______CTCC__CGTTAA
17._IMC_14
TT______CTCC__CGTTAA
18._IMC_14
TT______CTCC__CGTTAA
19._IMC_14
TT______CTCC__CGTTAA
20._IMC_14
TT______CTCC__CGTTAA
21._IMC_14
TT______CTCC__CGTTAA
22._IMC_14
TT______CTCC__CGTTAA
23._IMC_14
TT______CTCC__CGTTAA
24._IMC_14
TT______CTCC__CGTTAA
25._IMC_14
TT______CTCC__CGTTAA
26._IMC_14
TT______CTCC___TTAC
27._RUQ_1634
_AG_____CT_TT-CGTTAC
28._RUQ_1634
_AG________GG___
29._RUQ_1634
CC______CTCT__CCCTAC
30._GC-03-30-3-9
AAAGGG_GGAGAAAGGGAAGGCGAAAC
31._RUQ_1634
AAAGGG_GGAGAAAGGGAAGGCGAAAC
 5758596061626364656667686970
_Input profile
GGGGACAGGGGGGGTTCCCCAAACCCCG
1._GC-03-030-3-09
GGGGACAGGGGGGGTTCCCCAAACCCCG
2._GC-03-030-3-09
GGGGACAGGGGGGGTTCCCCAAACCCCG
3._GC-03-030-3-09
GGGGACAGGGGGGGTTCCCCAAACCCCG
4._GC-03-030-3-09
GGGGACAGGGGGGGTTCCCCAAACCCCG
5._GC-03-030-3-09
GGGGACAGGGGGGGTTCCCCAAACCCCG
6._GC-03-030-3-09
GGGGACAGGGGGGGTTCCCCAAACCCCG
7._GC-03-030-3-09
GGGGACAGGGGGGGTTCCCCAAACCCCG
8._GC-03-030-3-09
GGGGACAGGGGGGGTTCCCCAAACCCCG
9._GC-03-030-3-09
GGGGACAGGGGGGGTTCCCCAAACCCCG
10._GC-03-030-3-09
GGGGACAGGGGGGGTTCCCCAAACCCCG
11._GC-04-054-3-18
GGGGACAGGGGGGGTTCCCCAAACCCCG
12._GC-03-030-3-09
GGGGACAGGGGGGGTTCCCCAAACCCCG
13._IMC_14
GG_ACAGGGGG___CC__CCCG
14._IMC_14
GG_ACAGGGGG___CC__CCCG
15._IMC_14
GG_ACAGGGGG___CC__CCCG
16._IMC_14
GG_ACAGGGGG___CC__CCCG
17._IMC_14
GG_ACAGGGGG___CC__CCCG
18._IMC_14
GG_ACAGGGGG___CC__CCCG
19._IMC_14
GG_ACAGGGGG___CC__CCCG
20._IMC_14
GG_ACAGGGGG___CC__CCCG
21._IMC_14
GG_ACAGGGGG___CC__CCCG
22._IMC_14
GG_ACAGGGGG___CC__CCCG
23._IMC_14
GG_ACAGGGGG___CC__CCCG
24._IMC_14
GG_ACAGGGGG___CC__CCCG
25._IMC_14
GG_ACAGGGGG___CC__CCCG
26._IMC_14
GG_ACAGGGGG___CC__CCCG
27._RUQ_1634
_GGACAGGGGGGG_____CCCG
28._RUQ_1634
__ACAG_GGGG_____CCCG
29._RUQ_1634
GG_CCAATTGG___TT__CC_
30._GC-03-30-3-9
GGGGACAGCCCCGG__GGAAACCCCG
31._RUQ_1634
GGGGACAGCCCCGG__GGAAACCCCG
 7172737475767778798081   
_Input profile
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
1._GC-03-030-3-09
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
2._GC-03-030-3-09
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
3._GC-03-030-3-09
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
4._GC-03-030-3-09
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
5._GC-03-030-3-09
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
6._GC-03-030-3-09
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
7._GC-03-030-3-09
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
8._GC-03-030-3-09
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
9._GC-03-030-3-09
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
10._GC-03-030-3-09
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
11._GC-04-054-3-18
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
12._GC-03-030-3-09
CCATCCCCCTAACCTTTTATGGX_XX_XX_X
13._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
14._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
15._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
16._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
17._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
18._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
19._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
20._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
21._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
22._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
23._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
24._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
25._IMC_14
__CCCC_AA_TTTT__X_XX_XX_X
26._IMC_14
__CC__AA_TTTT__X_XX_XX_X
27._RUQ_1634
__CC__AACCTT___X_XX_XX_X
28._RUQ_1634
___CC__CC____X_XX_XX_X
29._RUQ_1634
__CTCT_AG_CTTT__X_XX_XX_X
30._GC-03-30-3-9
GGATGG_AG__AAAAATGGX_XX_XX_X
31._RUQ_1634
GGATGG_AG__AAAAATGGX_XX_XX_X

Input profile: IMC_14 GC-03-030-3-09

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

1._IMC_14 GC-03-030-3-09

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_14 GC-03-030-3-09

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._IMC_14 GC-03-030-3-09

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._IMC_14 GC-03-030-3-09

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._IMC_14 GC-03-030-3-09

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._IMC_14 GC-03-030-3-09

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._IMC_14 GC-03-030-3-09

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._IMC_14 GC-03-030-3-09

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

9._IMC_14 GC-03-030-3-09

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

10._IMC_14 GC-03-030-3-09

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

11._IMC_14 GC-04-054-3-18

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

12._IMC_14 GC-03-030-3-09

identical
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

14._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

16._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

17._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

18._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

19._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

20._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

21._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

22._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

23._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

24._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

25._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

26._IMC_14

98.5 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

27._IMC_14 RUQ_1634

96.1 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._IMC_14 RUQ_1634

88.9 %
18 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

29._IMC_14 RUQ_1634

62.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

53.6 %
70 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

53.6 %
70 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP329 45TcSNP944
46TcSNP1242 47TcSNP1383 48TcSNP547 49TcSNP776 50TcSNP151
51TcSNP1520 52TcSNP799 53TcSNP899 54TcSNP226 55TcSNP1442
56TcSNP193 57TcSNP25 58TcSNP364 59TcSNP144 60TcSNP230
61TcSNP560 62TcSNP723 63TcSNP731 64TcSNP701 65TcSNP1041
66TcSNP917 67Tcm003s01336581 68Tcm006s26664133 69TcSNP529 70TcSNP1458
71TcSNP60 72TcSNP430 73TcSNP619 74TcSNP1144 75TcSNP1156
76TcSNP469 77TcSNP999 78TcSNP242 79TcSNP1414 80TcSNP154
81TcSNP240