SNP Profiles of IMC-14   View Data

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 1234567891011121314
_Input profile
AACTAAGGCCCCCTCCGGTTCCTTAAAA
1._GC-03-030-3-09
AACTAAGGCCCCCTCCGGTTCCTTAAAA
2._GC-03-030-3-09
AACTAAGGCCCCCTCCGGTTCCTTAAAA
3._GC-03-030-3-09
AACTAAGGCCCCCTCCGGTTCCTTAAAA
4._GC-03-030-3-09
AACTAAGGCCCCCTCCGGTTCCTTAAAA
5._GC-03-030-3-09
AACTAAGGCCCCCTCCGGTTCCTTAAAA
6._GC-03-030-3-09
AACTAAGGCCCCCTCCGGTTCCTTAAAA
7._GC-03-030-3-09
AACTAAGGCCCCCTCCGGTTCCTTAAAA
8._GC-03-030-3-09
AACTAAGGCCCCCTCCGGTTCCTTAAAA
9._GC-04-054-3-18
AACTAAGGCCCCCTCCGGTTCCTTAAAA
10._GC-03-030-3-09
AACTAAGGCCCCCTCCGGTTCCTTAAAA
11._GC-03-030-3-09
AACTAAGGCCCCCTCCGGTTCCTTAAAA
12._GC-03-030-3-09
AACTAAGGCCCCCTCCGGTTCCTTAAAA
13._IMC_14
AACTAA___CTCCGG_CC___
14._IMC_14
AACTAA___CTCCGG_CC___
15._IMC_14
AACTAA___CTCCGG_CC___
16._IMC_14
AACTAA___CTCCGG_CC___
17._IMC_14
AACTAA___CTCCGG_CC___
18._IMC_14
AACTAA___CTCCGG_CC___
19._IMC_14
AACTAA___CTCCGG_CC___
20._IMC_14
AACTAA___CTCCGG_CC___
21._IMC_14
AACTAA___CTCCGG_CC___
22._IMC_14
AACTAA___CTCCGG_CC___
23._IMC_14
AACTAA___CTCCGG_CC___
24._IMC_14
AACTAA___CTCCGG_CC___
25._IMC_14
AACTAA___CTCCGG_CC___
26._IMC_14
AACTAA___CTCCGG_CC___
27._RUQ_1634
_CTAA_TT_CT__TTCC___
28._RUQ_1634
__AA_TT_________
29._RUQ_1634
AACTCC___CTCTGG_CC___
30._GC-03-30-3-9
AA_AAGG_GGAG_GGAAGGAATTAA
31._RUQ_1634
AA_AAGG_GGAG_GGAAGGAATTAA
 1516171819202122232425262728
_Input profile
GGCCGGCCAAGGTTAACCCCAATTGGGG
1._GC-03-030-3-09
GGCCGGCCAAGGTTAACCCCAATTGGGG
2._GC-03-030-3-09
GGCCGGCCAAGGTTAACCCCAATTGGGG
3._GC-03-030-3-09
GGCCGGCCAAGGTTAACCCCAATTGGGG
4._GC-03-030-3-09
GGCCGGCCAAGGTTAACCCCAATTGGGG
5._GC-03-030-3-09
GGCCGGCCAAGGTTAACCCCAATTGGGG
6._GC-03-030-3-09
GGCCGGCCAAGGTTAACCCCAATTGGGG
7._GC-03-030-3-09
GGCCGGCCAAGGTTAACCCCAATTGGGG
8._GC-03-030-3-09
GGCCGGCCAAGGTTAACCCCAATTGGGG
9._GC-04-054-3-18
GGCCGGCCAAGGTTAACCCCAATTGGGG
10._GC-03-030-3-09
GGCCGGCCAAGGTTAACCCCAATTGGGG
11._GC-03-030-3-09
GGCCGGCCAAGGTTAACCCCAATTGGGG
12._GC-03-030-3-09
GGCCGGCCAAGGTTAACCCCAATTGGGG
13._IMC_14
GG_GG___TTAA_CCAA___
14._IMC_14
GG_GG___TTAA_CCAA___
15._IMC_14
GG_GG___TTAA_CCAA___
16._IMC_14
GG_GG___TTAA_CCAA___
17._IMC_14
GG_GG___TTAA_CCAA___
18._IMC_14
GG_GG___TTAA_CCAA___
19._IMC_14
GG_GG___TTAA_CCAA___
20._IMC_14
GG_GG___TTAA_CCAA___
21._IMC_14
GG_GG___TTAA_CCAA___
22._IMC_14
GG_GG___TTAA_CCAA___
23._IMC_14
GG_GG___TTAA_CCAA___
24._IMC_14
GG_GG___TTAA_CCAA___
25._IMC_14
GG_GG___TTAA_CCAA___
26._IMC_14
GG_GG___TTAA_CCAA___
27._RUQ_1634
_CC___GG_AACCCC___GG
28._RUQ_1634
GG________CC____
29._RUQ_1634
AA_GG___TTAA_GGAA___
30._GC-03-30-3-9
GG_GGGGAAGGTTAAGGGGAAAACCGG
31._RUQ_1634
GG_GGGGAAGGTTAAGGGGAAAACCGG
 2930313233343536373839404142
_Input profile
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
1._GC-03-030-3-09
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
2._GC-03-030-3-09
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
3._GC-03-030-3-09
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
4._GC-03-030-3-09
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
5._GC-03-030-3-09
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
6._GC-03-030-3-09
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
7._GC-03-030-3-09
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
8._GC-03-030-3-09
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
9._GC-04-054-3-18
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
10._GC-03-030-3-09
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
11._GC-03-030-3-09
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
12._GC-03-030-3-09
GGCCAAGTGGTTAGCCGGCCGGTTTTAG
13._IMC_14
GG_AAGT__AG_____TT_
14._IMC_14
GG_AAGT__AG_____TT_
15._IMC_14
GG_AAGT__AG_____TT_
16._IMC_14
GG_AAGT__AG_____TT_
17._IMC_14
GG_AAGT__AG_____TT_
18._IMC_14
GG_AAGT__AG_____TT_
19._IMC_14
GG_AAGT__AG_____TT_
20._IMC_14
GG_AAGT__AG_____TT_
21._IMC_14
GG_AAGT__AG_____TT_
22._IMC_14
GG_AAGT__AG_____TT_
23._IMC_14
GG_AAGT__AG_____TT_
24._IMC_14
GG_AAGT__AG_____TT_
25._IMC_14
GG_AAGT__AG_____TT_
26._IMC_14
GG_AAGT__AG_____TT_
27._RUQ_1634
GGCCAAGT__AGCC__GGTT_AG
28._RUQ_1634
GG_AA____CC_____AG
29._RUQ_1634
CC_AGGT__AG_____CC_
30._GC-03-30-3-9
GGCCAAACCCAAAGGGGGGGCC_AAAG
31._RUQ_1634
GGCCAAACCCAAAGGGGGGGCC_AAAG
 4344454647484950515253545556
_Input profile
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
1._GC-03-030-3-09
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
2._GC-03-030-3-09
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
3._GC-03-030-3-09
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
4._GC-03-030-3-09
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
5._GC-03-030-3-09
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
6._GC-03-030-3-09
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
7._GC-03-030-3-09
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
8._GC-03-030-3-09
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
9._GC-04-054-3-18
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
10._GC-03-030-3-09
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
11._GC-03-030-3-09
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
12._GC-03-030-3-09
CCCCGGAGTTCTCCTTGGCGTTAAGGGG
13._IMC_14
_____CTCC__CGTTAAGG_
14._IMC_14
_____CTCC__CGTTAAGG_
15._IMC_14
_____CTCC__CGTTAAGG_
16._IMC_14
_____CTCC__CGTTAAGG_
17._IMC_14
_____CTCC__CGTTAAGG_
18._IMC_14
_____CTCC__CGTTAAGG_
19._IMC_14
_____CTCC__CGTTAAGG_
20._IMC_14
_____CTCC__CGTTAAGG_
21._IMC_14
_____CTCC__CGTTAAGG_
22._IMC_14
_____CTCC__CGTTAAGG_
23._IMC_14
_____CTCC__CGTTAAGG_
24._IMC_14
_____CTCC__CGTTAAGG_
25._IMC_14
_____CTCC__CGTTAAGG_
26._IMC_14
_____CTCC___TTACGG_
27._RUQ_1634
_____CT_TT-CGTTAC_GG
28._RUQ_1634
________GG_____
29._RUQ_1634
_____CTCT__CCCTACGG_
30._GC-03-30-3-9
GG_GGAGAAAGGGAAGGCGAAACGGGG
31._RUQ_1634
GG_GGAGAAAGGGAAGGCGAAACGGGG
 5758596061626364656667686970
_Input profile
ACAGGGGGGGTTCCCCAAAAACAGCCCG
1._GC-03-030-3-09
ACAGGGGGGGTTCCCCAAAAACAGCCCG
2._GC-03-030-3-09
ACAGGGGGGGTTCCCCAAAAACAGCCCG
3._GC-03-030-3-09
ACAGGGGGGGTTCCCCAAAAACAGCCCG
4._GC-03-030-3-09
ACAGGGGGGGTTCCCCAAAAACAGCCCG
5._GC-03-030-3-09
ACAGGGGGGGTTCCCCAAAAACAGCCCG
6._GC-03-030-3-09
ACAGGGGGGGTTCCCCAAAAACAGCCCG
7._GC-03-030-3-09
ACAGGGGGGGTTCCCCAAAAACAGCCCG
8._GC-03-030-3-09
ACAGGGGGGGTTCCCCAAAAACAGCCCG
9._GC-04-054-3-18
ACAGGGGGGGTTCCCCAAAAACAGCCCG
10._GC-03-030-3-09
ACAGGGGGGGTTCCCCAAAAAC_CCCG
11._GC-03-030-3-09
ACAGGGGGGGTTCCCCAA_AC_CCCG
12._GC-03-030-3-09
ACAGGGGGGGTTCCCCAA_AC_CCCG
13._IMC_14
ACAGGGGG___CC____CCCG
14._IMC_14
ACAGGGGG___CC____CCCG
15._IMC_14
ACAGGGGG___CC____CCCG
16._IMC_14
ACAGGGGG___CC____CCCG
17._IMC_14
ACAGGGGG___CC____CCCG
18._IMC_14
ACAGGGGG___CC____CCCG
19._IMC_14
ACAGGGGG___CC____CCCG
20._IMC_14
ACAGGGGG___CC____CCCG
21._IMC_14
ACAGGGGG___CC____CCCG
22._IMC_14
ACAGGGGG___CC____CCCG
23._IMC_14
ACAGGGGG___CC____CCCG
24._IMC_14
ACAGGGGG___CC____CCCG
25._IMC_14
ACAGGGGG___CC____CCCG
26._IMC_14
ACAGGGGG___CC____CCCG
27._RUQ_1634
ACAGGGGGGG_______CCCG
28._RUQ_1634
ACAG_GGGG_______CCCG
29._RUQ_1634
CCAATTGG___TT____CC_
30._GC-03-30-3-9
ACAGCCCCGG__GGAAAAAC_CCCG
31._RUQ_1634
ACAGCCCCGG__GGAAAAAC_CCCG
 717273747576777879808182  
_Input profile
CCATCCTTCCCTAACCTTTTATGGX_XX_X
1._GC-03-030-3-09
CCATCCTTCCCTAACCTTTTATGGX_XX_X
2._GC-03-030-3-09
CCATCCTTCCCTAACCTTTTATGGX_XX_X
3._GC-03-030-3-09
CCATCCTTCCCTAACCTTTTATGGX_XX_X
4._GC-03-030-3-09
CCATCCTTCCCTAACCTTTTATGGX_XX_X
5._GC-03-030-3-09
CCATCCTTCCCTAACCTTTTATGGX_XX_X
6._GC-03-030-3-09
CCATCCTTCCCTAACCTTTTATGGX_XX_X
7._GC-03-030-3-09
CCATCCTTCCCTAACCTTTTATGGX_XX_X
8._GC-03-030-3-09
CCATCCTTCCCTAACCTTTTATGGX_XX_X
9._GC-04-054-3-18
CCATCCTTCCCTAACCTTTTATGGX_XX_X
10._GC-03-030-3-09
CCATCCTTCCCTAACCTTTTATGGX_XX_X
11._GC-03-030-3-09
CCATCCTTCCCTAACCTTTTATGGX_XX_X
12._GC-03-030-3-09
CCATCC_CCCTAACCTTTTATGGX_XX_X
13._IMC_14
__CCTTCC_AA_TTTT__X_XX_X
14._IMC_14
__CCTTCC_AA_TTTT__X_XX_X
15._IMC_14
__CCTTCC_AA_TTTT__X_XX_X
16._IMC_14
__CCTTCC_AA_TTTT__X_XX_X
17._IMC_14
__CCTTCC_AA_TTTT__X_XX_X
18._IMC_14
__CCTTCC_AA_TTTT__X_XX_X
19._IMC_14
__CCTTCC_AA_TTTT__X_XX_X
20._IMC_14
__CCTTCC_AA_TTTT__X_XX_X
21._IMC_14
__CCTTCC_AA_TTTT__X_XX_X
22._IMC_14
__CCTTCC_AA_TTTT__X_XX_X
23._IMC_14
__CCTTCC_AA_TTTT__X_XX_X
24._IMC_14
__CCTTCC_AA_TTTT__X_XX_X
25._IMC_14
__CC_CC_AA_TTTT__X_XX_X
26._IMC_14
__CCTT__AA_TTTT__X_XX_X
27._RUQ_1634
__CC___AACCTT___X_XX_X
28._RUQ_1634
____CC__CC____X_XX_X
29._RUQ_1634
__CTCTCT_AG_CTTT__X_XX_X
30._GC-03-30-3-9
GGATGGAA_AG__AAAAATGGX_XX_X
31._RUQ_1634
GGATGGAA_AG__AAAAATGGX_XX_X

Input profile: IMC_14 GC-03-030-3-09

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._IMC_14 GC-03-030-3-09

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_14 GC-03-030-3-09

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._IMC_14 GC-03-030-3-09

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._IMC_14 GC-03-030-3-09

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._IMC_14 GC-03-030-3-09

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._IMC_14 GC-03-030-3-09

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._IMC_14 GC-03-030-3-09

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

8._IMC_14 GC-03-030-3-09

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

9._IMC_14 GC-04-054-3-18

identical
82 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

10._IMC_14 GC-03-030-3-09

identical
81 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

11._IMC_14 GC-03-030-3-09

identical
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._IMC_14 GC-03-030-3-09

identical
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

13._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

14._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

15._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

16._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

17._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

18._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

19._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

20._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

21._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

22._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

23._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

24._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

25._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

26._IMC_14

98.6 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

27._IMC_14 RUQ_1634

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._IMC_14 RUQ_1634

94.1 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

29._IMC_14 RUQ_1634

62.5 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

52.1 %
70 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

52.1 %
70 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP702
6TcSNP1096 7TcSNP1060 8TcSNP1165 9TcSNP429 10TcSNP75
11TcSNP891 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP1062
16TcSNP878 17TcSNP929 18TcSNP413 19TcSNP653 20TcSNP174
21TcSNP32 22TcSNP372 23TcSNP448 24TcSNP872 25TcSNP953
26TcSNP1034 27TcSNP1175 28TcSNP1111 29TcSNP577 30TcSNP90
31TcSNP998 32TcSNP150 33TcSNP28 34TcSNP751 35TcSNP1484
36TcSNP602 37TcSNP561 38TcSNP894 39TcSNP1063 40TcSNP1126
41TcSNP1270 42TcSNP329 43TcSNP944 44TcSNP1242 45TcSNP1383
46TcSNP547 47TcSNP776 48TcSNP151 49TcSNP1520 50TcSNP799
51TcSNP899 52TcSNP226 53TcSNP1442 54TcSNP193 55TcSNP25
56TcSNP364 57TcSNP144 58TcSNP230 59TcSNP560 60TcSNP723
61TcSNP731 62TcSNP701 63TcSNP1041 64TcSNP917 65Tcm003s01336581
66Tcm003s07402719 67Tcm006s26664133 68Tcm002s20575712 69TcSNP529 70TcSNP1458
71TcSNP60 72TcSNP430 73TcSNP619 74TcSNP994 75TcSNP1144
76TcSNP1156 77TcSNP469 78TcSNP999 79TcSNP242 80TcSNP1414
81TcSNP154 82TcSNP240