SNP Profiles of GU-168H   View Data

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 Key

 1234567891011121314
_Input profile
AATTCCGGGGCCCCCCCCGGTTCCCTAA
1._GU_168_/H
AATTCC____CCCCGG_CC__
2._RUQ_223
_CCCC__CC_CC__TTCC__
3._GU_168_/H
AACCCC____CCCCGG_CC__
4._GU_168_/H
AACCCC____CCCCGG_CC__
5._RUQ_223
AACCCC____CCCCAG_CC__
6._GU_168_/H
AACCCC____CCCCGG_CC__
7._GU_168_/H
AACCCC____CCCCGG_CC__
8._GU_168_/H
AACCCC____CCCCGG_CC__
9._GU_168_/H
AACCCC____CCCCGG_CC__
10._GU_168_/H
AACCCC____CCCCGG_CC__
11._GU_168_/H
AACCCC____CCCCGG_CC__
12._GU_168_/H
AACCCC____CCCCGG_CC__
13._GU_168_/H
AACCCC____CCCCGG_CC__
14._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
15._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
16._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
17._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
18._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
19._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
20._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
21._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
22._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
23._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
24._GC-03-23-2-12
AA_CCGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCAAGGCCCCTTAATTGGTTAACCGGAA
1._GU_168_/H
_AA__CC____TTAA_GGAA
2._RUQ_223
___CC____GG_AACCGG_
3._GU_168_/H
_GG__GG____TTAA_GGAA
4._GU_168_/H
_GG__GG____TTAA_GGAA
5._RUQ_223
_GG__GG____ATAA_GGAA
6._GU_168_/H
_GG__GG____TTAA_GGAA
7._GU_168_/H
_GG__GG____TTAA_GGAA
8._GU_168_/H
_GG__GG____TTAA_GGAA
9._GU_168_/H
_GG__GG____TTAA_GGAA
10._GU_168_/H
_GG__GG____TTAA_GGAA
11._GU_168_/H
_GG__GG____TTAA_GGAA
12._GU_168_/H
_GG__GG____TTAA_GGAA
13._GU_168_/H
_GG__GG____TTAA_GGAA
14._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
15._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
16._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
17._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
18._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
19._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
20._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
21._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
22._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
23._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
24._GC-03-23-2-12
CCGGCC_GGAAAGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTGGAACCCCGGTTGGTTAATTAACCGG
1._GU_168_/H
___CC_GGTT__AA____
2._RUQ_223
__GGCCCCAGTT__AGCC__GG
3._GU_168_/H
___CC_GGTT__GG____
4._GU_168_/H
___CC_GGTT__GG____
5._RUQ_223
___CC_AGTT__AG____
6._GU_168_/H
___CC_GGTT__GG____
7._GU_168_/H
_____GGTT__GG____
8._GU_168_/H
___CC_GGTT__GG____
9._GU_168_/H
___CC_GGTT__GG____
10._GU_168_/H
___CC_GGTT__GG____
11._GU_168_/H
___CC_GGTT__GG____
12._GU_168_/H
___CC_GGTT__GG____
13._GU_168_/H
___CC_GGTT__GG____
14._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
15._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
16._GC-03-023-2-12
TTTTGG_CCGGTTGGGGGGCCGGCCGG
17._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
18._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
19._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
20._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
21._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
22._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
23._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
24._GC-03-23-2-12
AAAAGGCCCCGGAACCCCGGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTCCAAGGAACCCCGGGGTTTTCCTTTT
1._GU_168_/H
_CC_________CCTT_
2._RUQ_223
TT__GG______TTTT_TT
3._GU_168_/H
_TT_________TTCC_
4._GU_168_/H
_TT__________CC_
5._RUQ_223
_TT_________TTCC_
6._GU_168_/H
_TT_________TTCC_
7._GU_168_/H
_TT_________TTCC_
8._GU_168_/H
_TT_________TTCC_
9._GU_168_/H
_TT_________TTCC_
10._GU_168_/H
_TT_________TTCC_
11._GU_168_/H
_TT_________TTCC_
12._GU_168_/H
_TT_________TTCC_
13._GU_168_/H
_TT_________TTCC_
14._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTT_CCTT
15._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
16._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
17._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
18._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
19._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
20._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
21._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
22._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
23._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
24._GC-03-23-2-12
_AA_GGAAGG_GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
CCTTCTAAGGGGACAATTGGGGTTCCGG
1._GU_168_/H
CC_CTAAGG_ACAATTGG___GG
2._RUQ_223
CCCCCCAA_GGAAGGGGGGAA___
3._GU_168_/H
CC_CCAAGG__GGGGGG___AG
4._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
5._RUQ_223
CC_CCAAGG_AAGGGGGG___AA
6._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
7._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
8._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
9._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
10._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
11._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
12._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
13._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
14._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
15._GC-03-023-2-12
CCCCCCAAGGGG_GGGGGGAACCCCAG
16._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
17._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
18._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
19._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
20._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
21._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
22._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
23._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
24._GC-03-23-2-12
GGGGGGAAGGGGAAGGCCCCAA___
 7172737475767778798081828384
_Input profile
TTAAAACCAAAACCGGCCTTAATTTTTT
1._GU_168_/H
TT_____CCGG___TTTTTT
2._RUQ_223
______AAGG__AACC__
3._GU_168_/H
CC_____AACC___CCCCCC
4._GU_168_/H
CC_____AACC___CCCCCC
5._RUQ_223
CC_____AAGG___CCCTCC
6._GU_168_/H
CC_____AACC___CCCCCC
7._GU_168_/H
CC_____AACC___CCCCCC
8._GU_168_/H
CC_____AACC___CCCCCC
9._GU_168_/H
CC_____AACC___CCCCCC
10._GU_168_/H
CC_____AACC___CCCCCC
11._GU_168_/H
CC_____AACC___CCCCCC
12._GU_168_/H
CC_____AACC___CCCCCC
13._GU_168_/H
CC_____AACC___CCCCCC
14._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
15._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
16._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
17._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
18._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
19._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
20._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
21._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
22._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
23._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
24._GC-03-23-2-12
GGCCAACCCC_AAGGGGTTAAGGGG_
 8586878889909192      
_Input profile
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GU_168_/H
_AA_CCTTTT__X_XX_XX_XX_XX_XX_X
2._RUQ_223
_AGCCCCTT___X_XX_XX_XX_XX_XX_X
3._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
4._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
5._RUQ_223
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
6._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
7._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
8._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
9._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
10._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
11._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
12._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
13._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
14._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
15._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
16._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
17._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
18._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
19._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
20._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
21._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
22._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
23._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
24._GC-03-23-2-12
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_168_/H GC-03-023-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

1._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

2._GU_168_/H RUQ_223

65.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._GU_168_/H

53.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

4._GU_168_/H

53.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

5._GU_168_/H RUQ_223

53.8 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

7._GU_168_/H

51.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

8._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

9._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

10._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

11._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

12._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

13._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._GU_168_/H GC-03-023-2-12

65.4 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

15._GU_168_/H GC-03-023-2-12

65.4 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._GU_168_/H GC-03-023-2-12

64.3 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

17._GU_168_/H GC-03-023-2-12

64.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

18._GU_168_/H GC-03-023-2-12

64.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

19._GU_168_/H GC-03-023-2-12

64.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._GU_168_/H GC-03-023-2-12

64.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

21._GU_168_/H GC-03-023-2-12

64.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._GU_168_/H GC-03-023-2-12

64.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

23._GU_168_/H GC-03-023-2-12

64.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

24._GU_168_/H GC-03-23-2-12

34 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240