SNP Profiles of GU-168H   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GU_168_/H
AACCCC____CCCCGG_CC__
2._GU_168_/H
AACCCC____CCCCGG_CC__
3._GU_168_/H
AACCCC____CCCCGG_CC__
4._GU_168_/H
AACCCC____CCCCGG_CC__
5._GU_168_/H
AACCCC____CCCCGG_CC__
6._GU_168_/H
AACCCC____CCCCGG_CC__
7._GU_168_/H
AACCCC____CCCCGG_CC__
8._GU_168_/H
AACCCC____CCCCGG_CC__
9._GU_168_/H
AACCCC____CCCCGG_CC__
10._GU_168_/H
AACCCC____CCCCGG_CC__
11._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
12._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
13._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
14._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
15._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
16._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
17._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
18._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
19._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
20._RUQ_223
_CCCC__CC_CC__TTCC__
21._RUQ_223
AACCCC____CCCCAG_CC__
22._GU_168_/H
AATTCC____CCCCGG_CC__
23._GC-03-023-2-12
AATTCCGGGGCCCCCCCCGGTTCCCTAA
24._GC-03-23-2-12
AA_CCGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GU_168_/H
_GG__GG____TTAA_GGAA
2._GU_168_/H
_GG__GG____TTAA_GGAA
3._GU_168_/H
_GG__GG____TTAA_GGAA
4._GU_168_/H
_GG__GG____TTAA_GGAA
5._GU_168_/H
_GG__GG____TTAA_GGAA
6._GU_168_/H
_GG__GG____TTAA_GGAA
7._GU_168_/H
_GG__GG____TTAA_GGAA
8._GU_168_/H
_GG__GG____TTAA_GGAA
9._GU_168_/H
_GG__GG____TTAA_GGAA
10._GU_168_/H
_GG__GG____TTAA_GGAA
11._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
12._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
13._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
14._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
15._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
16._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
17._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
18._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
19._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
20._RUQ_223
___CC____GG_AACCGG_
21._RUQ_223
_GG__GG____ATAA_GGAA
22._GU_168_/H
_AA__CC____TTAA_GGAA
23._GC-03-023-2-12
CCAAGGCCCCTTAATTGGTTAACCGGAA
24._GC-03-23-2-12
CCGGCC_GGAAAGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
1._GU_168_/H
____GGTT__GG_____
2._GU_168_/H
____GGTT__GG_____
3._GU_168_/H
____GGTT__GG_____
4._GU_168_/H
____GGTT__GG_____
5._GU_168_/H
____GGTT__GG_____
6._GU_168_/H
____GGTT__GG_____
7._GU_168_/H
____GGTT__GG_____
8._GU_168_/H
____GGTT__GG_____
9._GU_168_/H
____GGTT__GG_____
10._GU_168_/H
____GGTT__GG_____
11._GC-03-023-2-12
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
12._GC-03-023-2-12
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
13._GC-03-023-2-12
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
14._GC-03-023-2-12
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
15._GC-03-023-2-12
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
16._GC-03-023-2-12
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
17._GC-03-023-2-12
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
18._GC-03-023-2-12
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
19._GC-03-023-2-12
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
20._RUQ_223
__GGCCAGTT__AGCC__GGTT
21._RUQ_223
____AGTT__AG_____
22._GU_168_/H
____GGTT__AA_____
23._GC-03-023-2-12
TTGGAACCGGTTGGTTAATTAACCGGTT
24._GC-03-23-2-12
AAAAGGCCGGAACCCCGGGGGGGGCC_
 4344454647484950515253545556
_Input profile
TTAAGGAACCCCGGGGTTTTTTCCTTGG
1._GU_168_/H
TT_________TTCC__
2._GU_168_/H
TT__________CC__
3._GU_168_/H
TT_________TTCC__
4._GU_168_/H
TT_________TTCC__
5._GU_168_/H
TT_________TTCC__
6._GU_168_/H
TT_________TTCC__
7._GU_168_/H
TT_________TTCC__
8._GU_168_/H
TT_________TTCC__
9._GU_168_/H
TT_________TTCC__
10._GU_168_/H
TT_________TTCC__
11._GC-03-023-2-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
12._GC-03-023-2-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
13._GC-03-023-2-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
14._GC-03-023-2-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
15._GC-03-023-2-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
16._GC-03-023-2-12
TTAAGGAACCCCGGGGTTTT_CCTTGG
17._GC-03-023-2-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
18._GC-03-023-2-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
19._GC-03-023-2-12
TTAAGGAACCCCGGGGTTTTTTCCTTGG
20._RUQ_223
__GG______TTTT_TT-
21._RUQ_223
TT_________TTCC__
22._GU_168_/H
CC_________CCTT__
23._GC-03-023-2-12
CCAAGGAACCCCGGGGTTTTCCTTTT_
24._GC-03-23-2-12
AA_GGAAGG_GGGGAAAAAAGGAAGG
 5758596061626364656667686970
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCAG
1._GU_168_/H
CC_CCAAGG__GGGGGG___AG
2._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
3._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
4._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
5._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
6._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
7._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
8._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
9._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
10._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
11._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
12._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
13._GC-03-023-2-12
CCCCCCAAGGGG_GGGGGGAACCCCAG
14._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
15._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
16._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
17._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
18._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
19._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
20._RUQ_223
CCCCCCAA_GGAAGGGGGGAA___
21._RUQ_223
CC_CCAAGG_AAGGGGGG___AA
22._GU_168_/H
CC_CTAAGG_ACAATTGG___GG
23._GC-03-023-2-12
CCTTCTAAGGGGACAATTGGGGTTCCGG
24._GC-03-23-2-12
GGGGGGAAGGGGAAGGCCCCAA___
 7172737475767778798081828384
_Input profile
CCCCAACCCCGGAACCCCTTAACCCCCC
1._GU_168_/H
CC_____AACC___CCCCCC
2._GU_168_/H
CC_____AACC___CCCCCC
3._GU_168_/H
CC_____AACC___CCCCCC
4._GU_168_/H
CC_____AACC___CCCCCC
5._GU_168_/H
CC_____AACC___CCCCCC
6._GU_168_/H
CC_____AACC___CCCCCC
7._GU_168_/H
CC_____AACC___CCCCCC
8._GU_168_/H
CC_____AACC___CCCCCC
9._GU_168_/H
CC_____AACC___CCCCCC
10._GU_168_/H
CC_____AACC___CCCCCC
11._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
12._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
13._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
14._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
15._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
16._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
17._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
18._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
19._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
20._RUQ_223
______AAGG__AACC__
21._RUQ_223
CC_____AAGG___CCCTCC
22._GU_168_/H
TT_____CCGG___TTTTTT
23._GC-03-023-2-12
TTAAAACCAAAACCGGCCTTAATTTTTT
24._GC-03-23-2-12
GGCCAACCCC_AAGGGGTTAAGGGG_
 8586878889909192      
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
2._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
3._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
4._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
5._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
6._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
7._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
8._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
9._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
10._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
11._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
12._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
13._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
14._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
15._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
16._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
17._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
18._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
19._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
20._RUQ_223
_AGCCCCTT___X_XX_XX_XX_XX_XX_X
21._RUQ_223
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
22._GU_168_/H
_AA_CCTTTT__X_XX_XX_XX_XX_XX_X
23._GC-03-023-2-12
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
24._GC-03-23-2-12
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_168_/H GC-03-023-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

1._GU_168_/H

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

2._GU_168_/H

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

3._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

4._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

5._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

6._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

7._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

8._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

9._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

10._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

12._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._GU_168_/H GC-03-023-2-12

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._GU_168_/H GC-03-023-2-12

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

17._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

18._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

19._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

20._GU_168_/H RUQ_223

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._GU_168_/H RUQ_223

86.8 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._GU_168_/H

52.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

23._GU_168_/H GC-03-023-2-12

65.4 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._GU_168_/H GC-03-23-2-12

46.8 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240