SNP Profiles of GU-168H   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
7._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
8._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
9._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
10._GU_168_/H
AACCCC____CCCCGG_CC__
11._GU_168_/H
AACCCC____CCCCGG_CC__
12._GU_168_/H
AACCCC____CCCCGG_CC__
13._GU_168_/H
AACCCC____CCCCGG_CC__
14._GU_168_/H
AACCCC____CCCCGG_CC__
15._GU_168_/H
AACCCC____CCCCGG_CC__
16._GU_168_/H
AACCCC____CCCCGG_CC__
17._GU_168_/H
AACCCC____CCCCGG_CC__
18._GU_168_/H
AACCCC____CCCCGG_CC__
19._GU_168_/H
AACCCC____CCCCGG_CC__
20._RUQ_223
_CCCC__CC_CC__TTCC__
21._RUQ_223
AACCCC____CCCCAG_CC__
22._RUQ_223
__CC__CC________
23._GC-03-023-2-12
AATTCCGGGGCCCCCCCCGGTTCCCTAA
24._GU_168_/H
AATTCC____CCCCGG_CC__
25._GC-03-23-2-12
AA_CCGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
2._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
3._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
4._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
5._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
6._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
7._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
8._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
9._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
10._GU_168_/H
_GG__GG____TTAA_GGAA
11._GU_168_/H
_GG__GG____TTAA_GGAA
12._GU_168_/H
_GG__GG____TTAA_GGAA
13._GU_168_/H
_GG__GG____TTAA_GGAA
14._GU_168_/H
_GG__GG____TTAA_GGAA
15._GU_168_/H
_GG__GG____TTAA_GGAA
16._GU_168_/H
_GG__GG____TTAA_GGAA
17._GU_168_/H
_GG__GG____TTAA_GGAA
18._GU_168_/H
_GG__GG____TTAA_GGAA
19._GU_168_/H
_GG__GG____TTAA_GGAA
20._RUQ_223
___CC____GG_AACCGG_
21._RUQ_223
_GG__GG____ATAA_GGAA
22._RUQ_223
_GGCC_________GG_
23._GC-03-023-2-12
CCAAGGCCCCTTAATTGGTTAACCGGAA
24._GU_168_/H
_AA__CC____TTAA_GGAA
25._GC-03-23-2-12
CCGGCC_GGAAAGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
8._GC-03-023-2-12
TTTTGG_CCGGTTGGGGGGCCGGCCGG
9._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
10._GU_168_/H
___CC_GGTT__GG____
11._GU_168_/H
___CC_GGTT__GG____
12._GU_168_/H
___CC_GGTT__GG____
13._GU_168_/H
___CC_GGTT__GG____
14._GU_168_/H
___CC_GGTT__GG____
15._GU_168_/H
___CC_GGTT__GG____
16._GU_168_/H
___CC_GGTT__GG____
17._GU_168_/H
___CC_GGTT__GG____
18._GU_168_/H
___CC_GGTT__GG____
19._GU_168_/H
_____GGTT__GG____
20._RUQ_223
__GGCCCCAGTT__AGCC__GG
21._RUQ_223
___CC_AGTT__AG____
22._RUQ_223
___CC_AG____CC___
23._GC-03-023-2-12
TTGGAACCCCGGTTGGTTAATTAACCGG
24._GU_168_/H
___CC_GGTT__AA____
25._GC-03-23-2-12
AAAAGGCCCCGGAACCCCGGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTCCTTGG
1._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTCCTTGG
2._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTCCTTGG
3._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTCCTTGG
4._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTCCTTGG
5._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTCCTTGG
6._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTCCTTGG
7._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTCCTTGG
8._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTCCTTGG
9._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTCCTTGG
10._GU_168_/H
_TT_________CC__
11._GU_168_/H
_TT_________CC__
12._GU_168_/H
_TT_________CC__
13._GU_168_/H
_TT_________CC__
14._GU_168_/H
_TT_________CC__
15._GU_168_/H
_TT_________CC__
16._GU_168_/H
_TT_________CC__
17._GU_168_/H
_TT_________CC__
18._GU_168_/H
_TT_________CC__
19._GU_168_/H
_TT_________CC__
20._RUQ_223
TT__GG______TT_TT-
21._RUQ_223
_TT_________CC__
22._RUQ_223
___GG_________GG
23._GC-03-023-2-12
TTCCAAGGAACCCCGGGGTTTTTTTT_
24._GU_168_/H
_CC_________TT__
25._GC-03-23-2-12
_AA_GGAAGG_GGGGAAAAGGAAGG
 5758596061626364656667686970
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCAG
1._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
2._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
3._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
4._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
5._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
6._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
7._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
8._GC-03-023-2-12
CCCCCCAAGGGGAAGGGGGGAACCCCAG
9._GC-03-023-2-12
CCCCCCAAGGGG_GGGGGGAACCCCAG
10._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
11._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
12._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
13._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
14._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
15._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
16._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
17._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
18._GU_168_/H
CC_CCAAGG__GGGGGG___AG
19._GU_168_/H
CC_CCAAGG_AAGGGGGG___AG
20._RUQ_223
CCCCCCAA_GGAAGGGGGGAA___
21._RUQ_223
CC_CCAAGG_AAGGGGGG___AA
22._RUQ_223
______AAGG_GGAA__AA
23._GC-03-023-2-12
CCTTCTAAGGGGACAATTGGGGTTCCGG
24._GU_168_/H
CC_CTAAGG_ACAATTGG___GG
25._GC-03-23-2-12
GGGGGGAAGGGGAAGGCCCCAA___
 7172737475767778798081828384
_Input profile
CCCCAACCCCGGAACCCCTTAACCCCCC
1._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
2._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
3._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
4._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
5._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
6._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
7._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
8._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
9._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
10._GU_168_/H
CC_____AACC___CCCCCC
11._GU_168_/H
CC_____AACC___CCCCCC
12._GU_168_/H
CC_____AACC___CCCCCC
13._GU_168_/H
CC_____AACC___CCCCCC
14._GU_168_/H
CC_____AACC___CCCCCC
15._GU_168_/H
CC_____AACC___CCCCCC
16._GU_168_/H
CC_____AACC___CCCCCC
17._GU_168_/H
CC_____AACC___CCCCCC
18._GU_168_/H
CC_____AACC___CCCCCC
19._GU_168_/H
CC_____AACC___CCCCCC
20._RUQ_223
______AAGG__AACC__
21._RUQ_223
CC_____AAGG___CCCTCC
22._RUQ_223
______AAGG__AA__CC
23._GC-03-023-2-12
TTAAAACCAAAACCGGCCTTAATTTTTT
24._GU_168_/H
TT_____CCGG___TTTTTT
25._GC-03-23-2-12
GGCCAACCCC_AAGGGGTTAAGGGG_
 8586878889909192      
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
10._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
11._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
12._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
13._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
14._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
15._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
16._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
17._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
18._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
19._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
20._RUQ_223
_AGCCCCTT___X_XX_XX_XX_XX_XX_X
21._RUQ_223
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
22._RUQ_223
__CC_TT___X_XX_XX_XX_XX_XX_X
23._GC-03-023-2-12
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
24._GU_168_/H
_AA_CCTTTT__X_XX_XX_XX_XX_XX_X
25._GC-03-23-2-12
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_168_/H GC-03-023-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

1._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

4._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

8._GU_168_/H GC-03-023-2-12

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

9._GU_168_/H GC-03-023-2-12

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

12._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

13._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

14._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

15._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

16._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

17._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

18._GU_168_/H

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

19._GU_168_/H

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

20._GU_168_/H RUQ_223

93.9 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._GU_168_/H RUQ_223

88.2 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._GU_168_/H RUQ_223

85.7 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._GU_168_/H GC-03-023-2-12

67 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._GU_168_/H

56.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

25._GU_168_/H GC-03-23-2-12

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240