SNP Profiles of GU-168H   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
7._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
8._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
9._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
10._GU_168_/H
AACCCC____CCCCGG_CC__
11._GU_168_/H
AACCCC____CCCCGG_CC__
12._GU_168_/H
AACCCC____CCCCGG_CC__
13._GU_168_/H
AACCCC____CCCCGG_CC__
14._GU_168_/H
AACCCC____CCCCGG_CC__
15._GU_168_/H
AACCCC____CCCCGG_CC__
16._GU_168_/H
AACCCC____CCCCGG_CC__
17._GU_168_/H
AACCCC____CCCCGG_CC__
18._GU_168_/H
AACCCC____CCCCGG_CC__
19._GU_168_/H
AACCCC____CCCCGG_CC__
20._RUQ_223
_CCCC__CC_CC__TTCC__
21._RUQ_223
AACCCC____CCCCAG_CC__
22._RUQ_223
__CC__CC________
23._GC-03-023-2-12
AATTCCGGGGCCCCCCCCGGTTCCCTAA
24._GU_168_/H
AATTCC____CCCCGG_CC__
25._GC-03-23-2-12
AA_CCGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
2._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
3._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
4._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
5._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
6._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
7._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
8._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
9._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
10._GU_168_/H
_GG__GG____TTAA_GGAA
11._GU_168_/H
_GG__GG____TTAA_GGAA
12._GU_168_/H
_GG__GG____TTAA_GGAA
13._GU_168_/H
_GG__GG____TTAA_GGAA
14._GU_168_/H
_GG__GG____TTAA_GGAA
15._GU_168_/H
_GG__GG____TTAA_GGAA
16._GU_168_/H
_GG__GG____TTAA_GGAA
17._GU_168_/H
_GG__GG____TTAA_GGAA
18._GU_168_/H
_GG__GG____TTAA_GGAA
19._GU_168_/H
_GG__GG____TTAA_GGAA
20._RUQ_223
___CC____GG_AACCGG_
21._RUQ_223
_GG__GG____ATAA_GGAA
22._RUQ_223
_GGCC_________GG_
23._GC-03-023-2-12
CCAAGGCCCCTTAATTGGTTAACCGGAA
24._GU_168_/H
_AA__CC____TTAA_GGAA
25._GC-03-23-2-12
CCGGCC_GGAAAGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GC-03-023-2-12
TTTTGG_CCGGTTGGGGGGCCGGCCGG
8._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
10._GU_168_/H
___CC_GGTT__GG____
11._GU_168_/H
___CC_GGTT__GG____
12._GU_168_/H
___CC_GGTT__GG____
13._GU_168_/H
___CC_GGTT__GG____
14._GU_168_/H
___CC_GGTT__GG____
15._GU_168_/H
___CC_GGTT__GG____
16._GU_168_/H
___CC_GGTT__GG____
17._GU_168_/H
___CC_GGTT__GG____
18._GU_168_/H
_____GGTT__GG____
19._GU_168_/H
___CC_GGTT__GG____
20._RUQ_223
__GGCCCCAGTT__AGCC__GG
21._RUQ_223
___CC_AGTT__AG____
22._RUQ_223
___CC_AG____CC___
23._GC-03-023-2-12
TTGGAACCCCGGTTGGTTAATTAACCGG
24._GU_168_/H
___CC_GGTT__AA____
25._GC-03-23-2-12
AAAAGGCCCCGGAACCCCGGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTT_CCTT
9._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
10._GU_168_/H
_TT_________TTCC_
11._GU_168_/H
_TT_________TTCC_
12._GU_168_/H
_TT_________TTCC_
13._GU_168_/H
_TT_________TTCC_
14._GU_168_/H
_TT_________TTCC_
15._GU_168_/H
_TT_________TTCC_
16._GU_168_/H
_TT_________TTCC_
17._GU_168_/H
_TT_________TTCC_
18._GU_168_/H
_TT_________TTCC_
19._GU_168_/H
_TT__________CC_
20._RUQ_223
TT__GG______TTTT_TT
21._RUQ_223
_TT_________TTCC_
22._RUQ_223
___GG__________
23._GC-03-023-2-12
TTCCAAGGAACCCCGGGGTTTTCCTTTT
24._GU_168_/H
_CC_________CCTT_
25._GC-03-23-2-12
_AA_GGAAGG_GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
8._GC-03-023-2-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
9._GC-03-023-2-12
GGCCCCCCAAGGGG_GGGGGGAACCCC
10._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
11._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
12._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
13._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
14._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
15._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
16._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
17._GU_168_/H
_CC_CCAAGG__GGGGGG___
18._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
19._GU_168_/H
_CC_CCAAGG_AAGGGGGG___
20._RUQ_223
-CCCCCCAA_GGAAGGGGGGAA__
21._RUQ_223
_CC_CCAAGG_AAGGGGGG___
22._RUQ_223
GG______AAGG_GGAA__
23._GC-03-023-2-12
_CCTTCTAAGGGGACAATTGGGGTTCC
24._GU_168_/H
_CC_CTAAGG_ACAATTGG___
25._GC-03-23-2-12
GGGGGGGGAAGGGGAAGGCCCCAA__
 7172737475767778798081828384
_Input profile
AGCCCCAACCCCGGAACCCCTTAACCCC
1._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
2._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
3._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
4._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
5._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
6._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
7._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
8._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
9._GC-03-023-2-12
AGCCCCAACCCCGGAACCCCTTAACCCC
10._GU_168_/H
AGCC_____AACC___CCCC
11._GU_168_/H
AGCC_____AACC___CCCC
12._GU_168_/H
AGCC_____AACC___CCCC
13._GU_168_/H
AGCC_____AACC___CCCC
14._GU_168_/H
AGCC_____AACC___CCCC
15._GU_168_/H
AGCC_____AACC___CCCC
16._GU_168_/H
AGCC_____AACC___CCCC
17._GU_168_/H
AGCC_____AACC___CCCC
18._GU_168_/H
AGCC_____AACC___CCCC
19._GU_168_/H
AGCC_____AACC___CCCC
20._RUQ_223
_______AAGG__AACC_
21._RUQ_223
AACC_____AAGG___CCCT
22._RUQ_223
AA______AAGG__AA__
23._GC-03-023-2-12
GGTTAAAACCAAAACCGGCCTTAATTTT
24._GU_168_/H
GGTT_____CCGG___TTTT
25._GC-03-23-2-12
_GGCCAACCCC_AAGGGGTTAAGGGG
 858687888990919293     
_Input profile
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
9._GC-03-023-2-12
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
10._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
11._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
12._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
13._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
14._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
15._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
16._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
17._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
18._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
19._GU_168_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
20._RUQ_223
__AGCCCCTT___X_XX_XX_XX_XX_X
21._RUQ_223
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
22._RUQ_223
CC__CC_TT___X_XX_XX_XX_XX_X
23._GC-03-023-2-12
TTTTAATTCCTTTTAAGGX_XX_XX_XX_XX_X
24._GU_168_/H
TT_AA_CCTTTT__X_XX_XX_XX_XX_X
25._GC-03-23-2-12
_GG__GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_168_/H GC-03-023-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

4._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_168_/H GC-03-023-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

7._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

8._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

9._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

12._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

13._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

14._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

15._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

16._GU_168_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

17._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

18._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

19._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

20._GU_168_/H RUQ_223

94 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._GU_168_/H RUQ_223

88.5 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._GU_168_/H RUQ_223

85.7 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._GU_168_/H GC-03-023-2-12

66.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._GU_168_/H

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

25._GU_168_/H GC-03-23-2-12

47.5 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240