SNP Profiles of GU-168H   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GU_168_/H
AACCCC____CCCCGG_CC__
2._GU_168_/H
AACCCC____CCCCGG_CC__
3._GU_168_/H
AACCCC____CCCCGG_CC__
4._GU_168_/H
AACCCC____CCCCGG_CC__
5._GU_168_/H
AACCCC____CCCCGG_CC__
6._GU_168_/H
AACCCC____CCCCGG_CC__
7._GU_168_/H
AACCCC____CCCCGG_CC__
8._GU_168_/H
AACCCC____CCCCGG_CC__
9._GU_168_/H
AACCCC____CCCCGG_CC__
10._GU_168_/H
AACCCC____CCCCGG_CC__
11._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
12._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
13._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
14._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
15._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
16._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
17._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
18._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
19._GC-03-023-2-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
20._RUQ_223
_CCCC__CC_CC__TTCC__
21._RUQ_223
AACCCC____CCCCAG_CC__
22._GU_168_/H
AATTCC____CCCCGG_CC__
23._GC-03-023-2-12
AATTCCGGGGCCCCCCCCGGTTCCCTAA
24._GC-03-23-2-12
AA_CCGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GU_168_/H
_GG__GG____TTAA_GGAA
2._GU_168_/H
_GG__GG____TTAA_GGAA
3._GU_168_/H
_GG__GG____TTAA_GGAA
4._GU_168_/H
_GG__GG____TTAA_GGAA
5._GU_168_/H
_GG__GG____TTAA_GGAA
6._GU_168_/H
_GG__GG____TTAA_GGAA
7._GU_168_/H
_GG__GG____TTAA_GGAA
8._GU_168_/H
_GG__GG____TTAA_GGAA
9._GU_168_/H
_GG__GG____TTAA_GGAA
10._GU_168_/H
_GG__GG____TTAA_GGAA
11._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
12._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
13._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
14._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
15._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
16._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
17._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
18._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
19._GC-03-023-2-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
20._RUQ_223
___CC____GG_AACCGG_
21._RUQ_223
_GG__GG____ATAA_GGAA
22._GU_168_/H
_AA__CC____TTAA_GGAA
23._GC-03-023-2-12
CCAAGGCCCCTTAATTGGTTAACCGGAA
24._GC-03-23-2-12
CCGGCC_GGAAAGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GU_168_/H
___CC_GGTT__GG____
2._GU_168_/H
___CC_GGTT__GG____
3._GU_168_/H
_____GGTT__GG____
4._GU_168_/H
___CC_GGTT__GG____
5._GU_168_/H
___CC_GGTT__GG____
6._GU_168_/H
___CC_GGTT__GG____
7._GU_168_/H
___CC_GGTT__GG____
8._GU_168_/H
___CC_GGTT__GG____
9._GU_168_/H
___CC_GGTT__GG____
10._GU_168_/H
___CC_GGTT__GG____
11._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
12._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
13._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
14._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
15._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
16._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
17._GC-03-023-2-12
TTTTGG_CCGGTTGGGGGGCCGGCCGG
18._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
19._GC-03-023-2-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
20._RUQ_223
__GGCCCCAGTT__AGCC__GG
21._RUQ_223
___CC_AGTT__AG____
22._GU_168_/H
___CC_GGTT__AA____
23._GC-03-023-2-12
TTGGAACCCCGGTTGGTTAATTAACCGG
24._GC-03-23-2-12
AAAAGGCCCCGGAACCCCGGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GU_168_/H
_TT_________TTCC_
2._GU_168_/H
_TT__________CC_
3._GU_168_/H
_TT_________TTCC_
4._GU_168_/H
_TT_________TTCC_
5._GU_168_/H
_TT_________TTCC_
6._GU_168_/H
_TT_________TTCC_
7._GU_168_/H
_TT_________TTCC_
8._GU_168_/H
_TT_________TTCC_
9._GU_168_/H
_TT_________TTCC_
10._GU_168_/H
_TT_________TTCC_
11._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
12._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
13._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
14._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
15._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTT_CCTT
16._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
17._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
18._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
19._GC-03-023-2-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
20._RUQ_223
TT__GG______TTTT_TT
21._RUQ_223
_TT_________TTCC_
22._GU_168_/H
_CC_________CCTT_
23._GC-03-023-2-12
TTCCAAGGAACCCCGGGGTTTTCCTTTT
24._GC-03-23-2-12
_AA_GGAAGG_GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGGGGGGGAACCCCAG
1._GU_168_/H
_CC_CCAAGG_GGGGGG___AG
2._GU_168_/H
_CC_CCAAGG_GGGGGG___AG
3._GU_168_/H
_CC_CCAAGG_GGGGGG___AG
4._GU_168_/H
_CC_CCAAGG_GGGGGG___AG
5._GU_168_/H
_CC_CCAAGG_GGGGGG___AG
6._GU_168_/H
_CC_CCAAGG_GGGGGG___AG
7._GU_168_/H
_CC_CCAAGG_GGGGGG___AG
8._GU_168_/H
_CC_CCAAGG_GGGGGG___AG
9._GU_168_/H
_CC_CCAAGG_GGGGGG___AG
10._GU_168_/H
_CC_CCAAGG_GGGGGG___AG
11._GC-03-023-2-12
GGCCCCCCAAGGGGGGGGGGAACCCCAG
12._GC-03-023-2-12
GGCCCCCCAAGGGGGGGGGGAACCCCAG
13._GC-03-023-2-12
GGCCCCCCAAGGGGGGGGGGAACCCCAG
14._GC-03-023-2-12
GGCCCCCCAAGGGGGGGGGGAACCCCAG
15._GC-03-023-2-12
GGCCCCCCAAGGGGGGGGGGAACCCCAG
16._GC-03-023-2-12
GGCCCCCCAAGGGGGGGGGGAACCCCAG
17._GC-03-023-2-12
GGCCCCCCAAGGGGGGGGGGAACCCCAG
18._GC-03-023-2-12
GGCCCCCCAAGGGGGGGGGGAACCCCAG
19._GC-03-023-2-12
GGCCCCCCAAGGGGGGGGGGAACCCCAG
20._RUQ_223
-CCCCCCAA_GGGGGGGGAA___
21._RUQ_223
_CC_CCAAGG_GGGGGG___AA
22._GU_168_/H
_CC_CTAAGG_AATTGG___GG
23._GC-03-023-2-12
_CCTTCTAAGGGGAATTGGGGTTCCGG
24._GC-03-23-2-12
GGGGGGGGAAGGGGGGCCCCAA___
 7172737475767778798081828384
_Input profile
CCCCAACCCCGGAACCCCTTAACCCCCC
1._GU_168_/H
CC_____AACC___CCCCCC
2._GU_168_/H
CC_____AACC___CCCCCC
3._GU_168_/H
CC_____AACC___CCCCCC
4._GU_168_/H
CC_____AACC___CCCCCC
5._GU_168_/H
CC_____AACC___CCCCCC
6._GU_168_/H
CC_____AACC___CCCCCC
7._GU_168_/H
CC_____AACC___CCCCCC
8._GU_168_/H
CC_____AACC___CCCCCC
9._GU_168_/H
CC_____AACC___CCCCCC
10._GU_168_/H
CC_____AACC___CCCCCC
11._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
12._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
13._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
14._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
15._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
16._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
17._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
18._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
19._GC-03-023-2-12
CCCCAACCCCGGAACCCCTTAACCCCCC
20._RUQ_223
______AAGG__AACC__
21._RUQ_223
CC_____AAGG___CCCTCC
22._GU_168_/H
TT_____CCGG___TTTTTT
23._GC-03-023-2-12
TTAAAACCAAAACCGGCCTTAATTTTTT
24._GC-03-23-2-12
GGCCAACCCC_AAGGGGTTAAGGGG_
 8586878889909192      
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
2._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
3._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
4._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
5._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
6._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
7._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
8._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
9._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
10._GU_168_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
11._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
12._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
13._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
14._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
15._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
16._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
17._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
18._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
19._GC-03-023-2-12
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
20._RUQ_223
_AGCCCCTT___X_XX_XX_XX_XX_XX_X
21._RUQ_223
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
22._GU_168_/H
_AA_CCTTTT__X_XX_XX_XX_XX_XX_X
23._GC-03-023-2-12
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
24._GC-03-23-2-12
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_168_/H GC-03-023-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

2._GU_168_/H

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

3._GU_168_/H

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

4._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

5._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

6._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

7._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

8._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

9._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

10._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

12._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._GU_168_/H GC-03-023-2-12

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

16._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

17._GU_168_/H GC-03-023-2-12

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

18._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

19._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

20._GU_168_/H RUQ_223

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._GU_168_/H RUQ_223

86.8 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._GU_168_/H

53.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

23._GU_168_/H GC-03-023-2-12

65.9 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._GU_168_/H GC-03-23-2-12

46.8 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240