SNP Profiles of GU 125 /C   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTCC
1._GU_125_/C
AACCCC____CCCCGG_CC__
2._GU_125_/C
AACCCC____CCCCGG_CC__
3._GU_125_/C
AACCCC____CCCCGG_CC__
4._GU_125_/C
AACCCC____CCCCGG_CC__
5._GU_125_/C
AACCCC____CCCCGG_CC__
6._GC-01-138-7-17
AACCCCGGGGCCCCCCCCGGTTCCTTCC
7._GU_125_/C
_CCCC____CCCCGG_CC__
8._GC-01-138-7-17
AACCCCGGGGCCCCCCCCGGTTCCTTCC
9._GC-01-138-7-17
AACCCCGGGGCCCCCCCCGGTTCCTTCC
10._GC-01-138-7-17
_CCCCGGGGCCCCCCCCGGTTCCTTCC
11._GC-01-138-7-17
AACCCCGGGGCCCCCCCCGGTTCCTTCC
12._GU_125_/C
AACCCC____CCCCGG_CC__
13._RUQ_188
AACCAC____CCCCGG_CC__
14._RUQ_188
_CCAC__CC_CC__TTCC__
15._RUQ_188
AACCAC____CCCCGG_CC__
16._GC-01-138-7-17
AA_CCGGGG_GGGG_GGAAGGAACC
17._RUQ_188
AA_ACGGGG_GGGG_GGAAGGAACC
 1516171819202122232425262728
_Input profile
GGGGCCGGTTAATTGGAAAACCGGAATT
1._GU_125_/C
GG__GG____AAAA_GGAA_
2._GU_125_/C
GG__GG____AAAA_GGAA_
3._GU_125_/C
GG__GG____AAAA_GGAA_
4._GU_125_/C
GG__GG____AAAA_GGAA_
5._GU_125_/C
GG__GG____AAAA_GGAA_
6._GC-01-138-7-17
GGGGCCGGTTAATTGGAAAACCGGAATT
7._GU_125_/C
GG__GG____AAAA_GGAA_
8._GC-01-138-7-17
GGGGCCGGTTAATTGGAAAACCGGAATT
9._GC-01-138-7-17
GGGGCCGGTTAATTGGAAAACCGGAATT
10._GC-01-138-7-17
GGGGCCGGTTAATTGGAAAACCGGAATT
11._GC-01-138-7-17
GGGGCCGGTTAATTGGAAAACCGGAATT
12._GU_125_/C
GG__GG____AAAA_GGAA_
13._RUQ_188
GG__GG____ATAA_GGAA_
14._RUQ_188
__CC____GG_AACCGG__
15._RUQ_188
GG__GG____ATAA_GGAA_
16._GC-01-138-7-17
GGCC_GGAAAAAAGGAAAAGGCCAAAA
17._RUQ_188
GGCC_GGAGGGAAGGATAAGGCCAAAA
 2930313233343536373839404142
_Input profile
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
1._GU_125_/C
__CC_GGTT__GG_____
2._GU_125_/C
__CC_GGTT__GG_____
3._GU_125_/C
__CC_GGTT__GG_____
4._GU_125_/C
__CC_GGTT__GG_____
5._GU_125_/C
__CC_GGTT__GG_____
6._GC-01-138-7-17
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
7._GU_125_/C
__CC_GGTT__GG_____
8._GC-01-138-7-17
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
9._GC-01-138-7-17
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
10._GC-01-138-7-17
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
11._GC-01-138-7-17
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
12._GU_125_/C
__CC_GGTT__GG_____
13._RUQ_188
__CC_AGTT__GG_____
14._RUQ_188
_GGCCCCAGTT__GGCC__GGTT
15._RUQ_188
__CC_AGGT__GG_____
16._GC-01-138-7-17
AAGGCCCCGGAACCCCGGGGGGGGCC_
17._RUQ_188
AAGGCCCCAGAACCCCGGGGGGGGCC_
 4344454647484950515253545556
_Input profile
TTAAGGAACCCCGGGGTTTTTTCCTTGG
1._GU_125_/C
TT_________TTCC__
2._GU_125_/C
TT_________TTCC__
3._GU_125_/C
TT_________TTCC__
4._GU_125_/C
TT_________TTCC__
5._GU_125_/C
TT_________TTCC__
6._GC-01-138-7-17
TTAAGGAACCCCGGGGTTTTTTCCTTGG
7._GU_125_/C
TT_________TTCC__
8._GC-01-138-7-17
TTAAGGAACCCCGGGGTTTTTTCCTTGG
9._GC-01-138-7-17
TTAAGGAACCCCGGGGTTTTTTCCTTGG
10._GC-01-138-7-17
TTAAGGAACCCCGGGGTTTTTTCCTTGG
11._GC-01-138-7-17
TTAAGGAACCCCGGGGTTTTTTCCTTGG
12._GU_125_/C
TT_________TTCC__
13._RUQ_188
TT_________TTCC__
14._RUQ_188
__GG______TTTT_TT-
15._RUQ_188
TT_________TTCC__
16._GC-01-138-7-17
AA_GGAAGG_GGGGAAAAAAGGAAGG
17._RUQ_188
AA_GGAAGG_GGGGAAAAAAGGAAGG
 5758596061626364656667686970
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCAA
1._GU_125_/C
CC_CCAAGG_AAGGGGGG___AA
2._GU_125_/C
CC_CCAAGG_AAGGGGGG___AA
3._GU_125_/C
CC_CCAAGG_AAGGGGGG___AA
4._GU_125_/C
CC_CCAAGG_AAGGGGGG___AA
5._GU_125_/C
CC_CCAAGG_AAGG_GG___AA
6._GC-01-138-7-17
CCCCCCAAGGGGAAGG_GGAACCCCAA
7._GU_125_/C
CC_CCAAGG_AAGGGGGG___AA
8._GC-01-138-7-17
CCCCCCAAGGGGAAGGGGGGAACCCCAA
9._GC-01-138-7-17
CCCCCCAAGGGGAAGGGGGGAACCCCAA
10._GC-01-138-7-17
CCCCCCAAGGGGAAGGGGGGAACCCCAA
11._GC-01-138-7-17
CCCCCCAAGGGGAAGGGGGGAACCCCAA
12._GU_125_/C
CC_CCAAGG_AAGGGGGG___AA
13._RUQ_188
CC_CCAAGG_AAGGGGGG___AG
14._RUQ_188
CCCCCCAA_GGAAGGGGGGAA___
15._RUQ_188
CC_CCAAGG_AAGGGGGG___AG
16._GC-01-138-7-17
GGGGGGAAGGGGAAGGCCCCAA___
17._RUQ_188
GGGGGGAAGGGGAAGGCCCCAA___
 7172737475767778798081828384
_Input profile
CCAAAGCCCCGGAACCCCTTAACCCCCC
1._GU_125_/C
CC_____AACC___CCCCCC
2._GU_125_/C
CC_____AACC___CCCCCC
3._GU_125_/C
CC_____AACC___CCCCCC
4._GU_125_/C
CC_____AACC___CCCCCC
5._GU_125_/C
CC_____AACC___CCCCCC
6._GC-01-138-7-17
CCAAAGCCCCGGAACCCCTTAACCCCCC
7._GU_125_/C
CC_____AACC___CCCCCC
8._GC-01-138-7-17
CCAAAGCCCCGGAACCCCTTAACCCCCC
9._GC-01-138-7-17
CCAAAGCCCCGGAACCCCTTAACCCCCC
10._GC-01-138-7-17
CCAAAGCCCCGGAACCCCTTAACCCCCC
11._GC-01-138-7-17
CCAAAGCCCCGGAACCCCTTAACCCCCC
12._GU_125_/C
CC_____AACC___CCCCCC
13._RUQ_188
CC_____AACG___CCCCCC
14._RUQ_188
______AACG__AACC__
15._RUQ_188
CC_____AACG___CCCCCC
16._GC-01-138-7-17
GGAAAGCCCC_AAGGGGTTAAGGGG_
17._RUQ_188
GGACAACCCC_AACGGGTTAAGGGG_
 8586878889909192      
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GU_125_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
2._GU_125_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
3._GU_125_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
4._GU_125_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
5._GU_125_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
6._GC-01-138-7-17
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GU_125_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
8._GC-01-138-7-17
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-01-138-7-17
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
10._GC-01-138-7-17
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
11._GC-01-138-7-17
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
12._GU_125_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
13._RUQ_188
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
14._RUQ_188
_GGCCCCTT___X_XX_XX_XX_XX_XX_X
15._RUQ_188
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
16._GC-01-138-7-17
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X
17._RUQ_188
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_125_/C GC-01-138-7-17

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 4 > FP
 Dapeng Zhang, 2016

2._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 10 > F
 Dapeng Zhang, 2016

4._GU_125_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 1 > FP
 Dapeng Zhang, 2016

5._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 11
 Dapeng Zhang, 2016

6._GU_125_/C GC-01-138-7-17

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._GU_125_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 9
 Dapeng Zhang, 2016

8._GU_125_/C GC-01-138-7-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_125_/C GC-01-138-7-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

10._GU_125_/C GC-01-138-7-17

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._GU_125_/C GC-01-138-7-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

12._GU_125_/C

identical
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 20
 Dapeng Zhang, 2016

13._GU_125_/C RUQ_188

93.6 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._GU_125_/C RUQ_188

94.2 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._GU_125_/C RUQ_188

92.3 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_125_/C GC-01-138-7-17

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 7, Rep: 17, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

17._GU_125_/C RUQ_188

44.2 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP521 15TcSNP1062
16TcSNP836 17TcSNP878 18TcSNP929 19TcSNP413 20TcSNP653
21TcSNP1149 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240