SNP Profiles of CC-137 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	CT	CC	GG	AG	CC	CC	CT	CC	GG	CC	CC	CT
1._CC_137	AA	AA	CT	CC	_	_	_	_	CT	CC	GG	_	CC	_
2._CC_137	AA	AA	CT	_	_	_	_	_	CT	CT	GG	_	CC	_
3._GC-01-134-7-11	AA	AA	CT	CC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
4._GC-01-134-7-11	AA	AA	CT	CC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
5._GC-01-134-7-11	AA	AA	CT	CC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
6._GC-01-134-7-11	AA	AA	CT	CC	AG	AG	CT	CC	CT	CT	GG	CT	CC	CT
7._RUQ_1637	AA	AA	CT	CC	_	_	_	_	CT	CT	GG	_	CC	_
8._CC_137	AA	AA	CT	CC	_	_	_	_	CT	CT	GG	_	CC	_
9._CC_137	AA	AA	CT	CC	_	_	_	_	CT	CT	GG	_	CC	_
10._CC_137	AA	AA	CT	CC	_	_	_	_	CT	CT	GG	_	CC	_
11._CC_137	AA	AA	CT	CC	_	_	_	_	CT	CT	GG	_	CC	_
12._RUQ_1637	_	_	-	CC	_	_	TT	_	CT	_	_	CT	CC	_
13._RUQ_1637	_	_	_	CC	_	_	TT	_	_	_	_	_	_	_
14._RUQ_1637	AA	AA	_	CC	AG	AG	_	GG	AG	_	GG	AG	GG	AG
15._MITC-000809	AA	AA	_	CC	AG	AG	_	GG	AG	_	GG	AG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	AA	GG	CG	GG	CC	GG	TT	GG	AT	AT	CG	CC
1._CC_137	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	CC
2._CC_137	_	_	AA	_	_	GG	_	_	_	_	TT	_	_	GG
3._GC-01-134-7-11	AT	CC	AA	GG	CC	GG	CT	AA	TT	GG	_	AA	CC	GG
4._GC-01-134-7-11	AT	CC	AA	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	GG
5._GC-01-134-7-11	AT	CC	AA	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	GG
6._GC-01-134-7-11	AT	CC	AA	GG	CC	GG	CT	AA	TT	GG	TT	AA	CC	GG
7._RUQ_1637	_	_	AA	_	_	GG	_	_	_	_	TT	AA	_	GG
8._CC_137	_	_	AA	_	_	GG	_	_	_	_	_	AA	_	GG
9._CC_137	_	_	AA	_	_	GG	_	_	_	_	TT	AA	_	GG
10._CC_137	_	_	AA	_	_	GG	_	_	_	_	TT	AA	_	GG
11._CC_137	_	_	AA	_	_	GG	_	_	_	_	TT	AA	_	GG
12._RUQ_1637	_	_	_	_	CC	_	_	_	_	GG	_	AA	CC	GG
13._RUQ_1637	_	_	AA	TT	_	_	_	_	_	_	_	_	_	GG
14._RUQ_1637	AT	CC	AA	CC	_	GG	AG	GG	AA	GG	TT	AA	GG	CC
15._MITC-000809	AT	CC	AA	CC	_	GG	AG	GG	AA	GG	TT	AA	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	CT	GT	AG	CC	CC	AA	GG	GG	TT	GG	CT	AA	CC
1._CC_137	AA	_	_	_	CC	_	AA	GG	_	_	GG	_	_	_
2._CC_137	AA	_	_	_	CC	_	AG	GT	_	_	_	_	_	_
3._GC-01-134-7-11	AA	TT	GT	AG	CC	AC	AG	GT	GG	GT	AG	CC	AA	CC
4._GC-01-134-7-11	AA	TT	GT	AG	CC	AC	AG	GT	GG	GT	AG	CC	AA	CC
5._GC-01-134-7-11	AA	TT	GT	AG	CC	AC	AG	GT	GG	GT	AG	CC	AA	CC
6._GC-01-134-7-11	AA	TT	GT	AG	CC	AC	AG	GT	GG	GT	AG	CC	AA	CC
7._RUQ_1637	AA	_	_	_	CC	_	AG	GT	_	_	AG	_	_	_
8._CC_137	AA	_	_	_	CC	_	AG	GT	_	_	AG	_	_	_
9._CC_137	AA	_	_	_	CC	_	AG	GT	_	_	AG	_	_	_
10._CC_137	AA	_	_	_	CC	_	AG	GT	_	_	AG	_	_	_
11._CC_137	AA	_	_	_	CC	_	AG	GT	_	_	AG	_	_	_
12._RUQ_1637	_	_	_	AG	CC	AC	AG	GT	_	_	AG	CC	_	_
13._RUQ_1637	_	_	_	_	CC	_	AG	_	_	_	_	CC	_	_
14._RUQ_1637	AA	AA	AC	AG	CC	AC	AG	AC	CC	AC	AG	GG	AA	GG
15._MITC-000809	AA	AA	AC	AG	CC	AC	AG	AC	CC	AC	AG	GG	AA	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	CT	AG	AG	AA	CT	AC	GG	GG	GT	TT	CT	CT
1._CC_137	_	_	CT	_	_	_	_	_	_	_	_	_	CT	CT
2._CC_137	_	_	_	_	_	_	_	_	_	_	_	_	_	_
3._GC-01-134-7-11	GT	AT	CC	AG	AG	AG	CT	CC	GG	GG	TT	TT	CT	CT
4._GC-01-134-7-11	GT	AT	CC	AG	AG	AG	CT	CC	GG	GG	TT	TT	CT	CT
5._GC-01-134-7-11	GT	AT	CC	AG	AG	AG	CT	CC	GG	GG	TT	TT	CT	CT
6._GC-01-134-7-11	GT	AT	CC	AG	AG	AG	CT	CC	GG	GG	TT	TT	CT	CT
7._RUQ_1637	_	_	CC	_	_	_	_	_	_	_	_	_	CT	CT
8._CC_137	_	_	CC	_	_	_	_	_	_	_	_	_	CT	CT
9._CC_137	_	_	CC	_	_	_	_	_	_	_	_	_	CT	CT
10._CC_137	_	_	CC	_	_	_	_	_	_	_	_	_	CT	CT
11._CC_137	_	_	CC	_	_	_	_	_	_	_	_	_	CT	CT
12._RUQ_1637	GT	AT	_	_	AG	_	_	_	_	_	_	CT	CT	_
13._RUQ_1637	_	_	_	_	AG	_	_	_	_	_	_	_	_	_
14._RUQ_1637	AC	_	GG	_	AG	AA	AG	_	GG	GG	AA	AG	AG	AG
15._MITC-000809	AC	_	GG	_	AG	AA	AG	_	GG	GG	AA	AG	AG	AG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GT	GG	GG	CT	CT	AA	GG	AG	AC	AG	GT	GT	GG	TT
1._CC_137	_	_	GG	_	CT	AA	GG	_	AC	AG	GT	GT	_	_
2._CC_137	_	_	_	_	CT	AC	GG	_	CC	AA	TT	GG	_	_
3._GC-01-134-7-11	GT	AG	CC	CT	CT	AC	GG	AG	CC	AA	TT	GG	GG	TT
4._GC-01-134-7-11	GT	AG	CC	CT	CT	AC	GG	AG	CC	AA	TT	GG	GG	TT
5._GC-01-134-7-11	GT	AG	CC	CT	CT	AC	GG	AG	CC	AA	TT	GG	GG	TT
6._GC-01-134-7-11	GT	AG	CC	CT	CT	AC	GG	AG	CC	AA	TT	GG	GG	TT
7._RUQ_1637	_	_	CC	_	CT	AC	GG	_	CC	AA	TT	GG	_	_
8._CC_137	_	_	CC	_	CT	AC	GG	_	CC	AA	TT	GG	_	_
9._CC_137	_	_	CC	_	CT	AC	GG	_	CC	AA	TT	GG	_	_
10._CC_137	_	_	CC	_	CT	AC	GG	_	CC	AA	TT	GG	_	_
11._CC_137	_	_	CC	_	CT	AC	GG	_	CC	AA	TT	GG	_	_
12._RUQ_1637	GT	AA	CC	CT	CT	AC	_	AG	CC	AA	TT	GG	GG	_
13._RUQ_1637	_	AG	_	_	_	_	_	_	CC	AA	_	GG	GG	_
14._RUQ_1637	AC	AG	GG	AG	AG	AC	GG	AG	CC	AA	AA	CC	GG	_
15._MITC-000809	AC	AG	GG	AG	AG	AC	GG	AG	CC	AA	AA	CC	GG	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CG	AA	TT	CC	AG	CC	AA	AG	CC	GG	TT	AA	AC	CC
1._CC_137	_	AA	TT	_	_	_	_	_	CC	GG	_	_	_	CC
2._CC_137	_	AG	TT	_	_	_	_	_	CC	GG	_	_	_	CT
3._GC-01-134-7-11	CC	GG	TT	AA	AA	AC	AA	AG	CC	CG	CC	AT	AC	CT
4._GC-01-134-7-11	CC	GG	TT	AA	AA	AC	AA	AG	CC	CG	CC	AT	AC	CT
5._GC-01-134-7-11	CC	GG	TT	AA	AA	AC	AA	AG	CC	CG	CC	AT	AC	CT
6._GC-01-134-7-11	CC	GG	TT	AA	AA	AC	AA	AG	CC	CG	CC	AT	AC	CT
7._RUQ_1637	_	AG	TT	_	_	_	_	_	CC	_	_	_	_	CT
8._CC_137	_	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CT
9._CC_137	_	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CT
10._CC_137	_	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CT
11._CC_137	_	GG	TT	_	_	_	_	_	CC	CG	_	_	_	CT
12._RUQ_1637	_	_	_	_	_	_	_	_	CC	CG	_	_	AC	CT
13._RUQ_1637	_	AG	_	_	_	_	_	_	AC	CG	_	_	AC	_
14._RUQ_1637	_	_	AA	AA	AA	AC	AA	_	CC	CC	GG	AT	AC	AG
15._MITC-000809	_	_	AA	AA	AA	AC	AA	_	CC	CC	GG	AT	AC	AG

	85	86	87	88	89	90	91	92	93	94
_Input profile	CC	CT	TT	AA	CT	CC	GT	TT	AT	GG	X_X	X_X	X_X	X_X
1._CC_137	CC	CT	_	AA	_	CC	GT	TT	_	_	X_X	X_X	X_X	X_X
2._CC_137	CT	CT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
3._GC-01-134-7-11	CT	CT	TT	AG	TT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X
4._GC-01-134-7-11	CT	CT	TT	AG	TT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X
5._GC-01-134-7-11	CT	CT	TT	AG	TT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X
6._GC-01-134-7-11	CT	CT	TT	AG	TT	CT	TT	TT	AT	GG	X_X	X_X	X_X	X_X
7._RUQ_1637	CT	CT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
8._CC_137	CT	CT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
9._CC_137	CT	CT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
10._CC_137	CT	CT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
11._CC_137	CT	CT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
12._RUQ_1637	_	_	_	AG	TT	CT	TT	_	_	_	X_X	X_X	X_X	X_X
13._RUQ_1637	_	CT	_	_	TT	_	TT	_	_	_	X_X	X_X	X_X	X_X
14._RUQ_1637	AG	_	AA	_	_	AG	AA	AA	AT	GG	X_X	X_X	X_X	X_X
15._MITC-000809	AG	_	AA	_	_	AG	AA	AA	AT	GG	X_X	X_X	X_X	X_X

Input profile: CC_137 GC-01-134-7-11

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

1._CC_137

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 4

Dapeng Zhang, 2016

2._CC_137

74.2 %
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

3._CC_137 GC-01-134-7-11

72 %
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

4._CC_137 GC-01-134-7-11

71.8 %
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

5._CC_137 GC-01-134-7-11

71.8 %
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

6._CC_137 GC-01-134-7-11

71.8 %
94 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

7._CC_137 RUQ_1637

71.8 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._CC_137

70.5 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 1

Dapeng Zhang, 2016

9._CC_137

70 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1711 6

Dapeng Zhang, 2016

10._CC_137

70 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 5

Dapeng Zhang, 2016

11._CC_137

70 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1711 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._CC_137 RUQ_1637

63.1 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._CC_137 RUQ_1637

59.5 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

14._CC_137 RUQ_1637

43.8 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

15._CC_137 MITC-000809

43.8 %
80 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240