SNP Profiles of GU-133C   View Data

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 Key

 1234567891011121314
_Input profile
AACCACGGGGCCCCCCCCGGTTTTAACC
1._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTTTAACC
2._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTTTAACC
3._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTTTAACC
4._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTTTAACC
5._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTTTAACC
6._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTTTAACC
7._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTTTAACC
8._GC-08-164-4-07
AACCACGGGG_CCCCCCGGTTTTAACC
9._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTTTAACC
10._GC-08-164-4-07
AA_ACGGGGCCCCCCCCGGTTTTAACC
11._RUQ_190
_CCAC__CC_CC__TT___
12._GU_133_/C
AACCAC____CCCCGG____
13._GU_133_/C
AACCAC____CCCCGG____
14._GU_133_/C
AACCAC____CCCCGG____
15._GU_133_/C
AACCAC____CCCCGG____
16._GU_133_/C
AACCAC____CCCCGG____
17._GU_133_/C
AACCAC____CCCCGG____
18._GU_133_/C
AACCAC____CCCCGG____
19._GU_133_/C
AACCAC____CCCCGG____
20._GU_133_/C
AACCAC____CCCCGG____
21._GU_133_/C
AACCAC____CCCCGG____
22._GU_133_/C
AA_AC____CCCCGG____
23._RUQ_190
AACCAC____CCCCGG____
24._RUQ_190
__AC__CC________
25._RUQ_190
__AC____CC______
26._GC-01-116-6-13
AA_ACGGGG_GGGG_GGAAAATTCC
27._MITC-000670
AA_ACGGGG_GGGG_GGAAAATTCC
 1516171819202122232425262728
_Input profile
AAGGGGCCGGAATTGGATAACCGGAATT
1._GC-01-116-6-13
_GGGGCCGGAATTGGATAACCGGAATT
2._GC-01-116-6-13
_GGGGCCGGAATTGGATAACCGGAATT
3._GC-01-116-6-13
_GGGGCCGGAATTGGATAACCGGAATT
4._GC-01-116-6-13
_GGGGCCGGAATTGGATAACCGGAATT
5._GC-08-164-4-07
_GGGGCCGGAATTGGATAACCGGAATT
6._GC-08-164-4-07
_GGGGCCGGAATTGGATAACCGGAATT
7._GC-08-164-4-07
_GGGGCCGGAATTGGATAACCGGAATT
8._GC-08-164-4-07
_GGGGCCGGAATTGGATAACCGGAATT
9._GC-08-164-4-07
_GGGGCCGGAATTGGATAACCGGAATT
10._GC-08-164-4-07
_GGGGCCGGAATTGGATAACCGGAATT
11._RUQ_190
___CC___GG_AACCGG__
12._GU_133_/C
_GG__GG___ATAA_GGAA_
13._GU_133_/C
_GG__GG___ATAA_GGAA_
14._GU_133_/C
_GG__GG___ATAA_GGAA_
15._GU_133_/C
_GG__GG___ATAA_GGAA_
16._GU_133_/C
_GG__GG___ATAA_GGAA_
17._GU_133_/C
_GG__GG___ATAA_GGAA_
18._GU_133_/C
_GG__GG___ATAA_GGAA_
19._GU_133_/C
_GG__GG___ATAA_GGAA_
20._GU_133_/C
_GG__GG___ATAA_GGAA_
21._GU_133_/C
_GG__GG___ATAA_GGAA_
22._GU_133_/C
_GG__GG___ATAA_GGAA_
23._RUQ_190
_GG__GG___ATAA_GGAA_
24._RUQ_190
_GGCC________GG__
25._RUQ_190
GG__GG___GG_AACCCC__
26._GC-01-116-6-13
GGGGCC_GGGGAAGGATAAGGCCAAAA
27._MITC-000670
GGGGCC_GGGGAAGGATAAGGCCAAAA
 2930313233343536373839404142
_Input profile
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
1._GC-01-116-6-13
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
2._GC-01-116-6-13
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
3._GC-01-116-6-13
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
4._GC-01-116-6-13
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
5._GC-08-164-4-07
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
6._GC-08-164-4-07
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
7._GC-08-164-4-07
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
8._GC-08-164-4-07
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
9._GC-08-164-4-07
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
10._GC-08-164-4-07
TTGGCCCCGGTTGGCCGGCCGGTTTTAA
11._RUQ_190
_GGCCCCGGTTGGCC__GGTT__
12._GU_133_/C
__CC_GGTTGG_____TT_
13._GU_133_/C
__CC_GGTTGG_____TT_
14._GU_133_/C
__CC_GGTTGG_____TT_
15._GU_133_/C
__CC_GGTTGG_____TT_
16._GU_133_/C
__CC_GGTTGG_____TT_
17._GU_133_/C
__CC_GGTTGG_____TT_
18._GU_133_/C
__CC_GGTTGG_____TT_
19._GU_133_/C
__CC_GGTTGG_____TT_
20._GU_133_/C
__CC_GGTTGG_____TT_
21._GU_133_/C
__CC_GGTTGG_____TT_
22._GU_133_/C
__CC_GGTTGG_____TT_
23._RUQ_190
__CC_GGGTGG_____TT_
24._RUQ_190
__CC_GG__CC______
25._RUQ_190
_GGCC____CC___TT_AA
26._GC-01-116-6-13
AAGGCCCCGGAAGGGGGGGGCC_AA_
27._MITC-000670
AAGGCCCCGGAAGGGGGGGGCC_AA_
 4344454647484950515253545556
_Input profile
GGAACCCCGGTTTTTTCCTTGGCCCCCC
1._GC-01-116-6-13
GGAACCCCGGTTTTTTCCTTGGCCCCCC
2._GC-01-116-6-13
GGAACCCCGGTTTTTTCCTTGGCCCCCC
3._GC-01-116-6-13
GGAACCCCGGTTTTTTCCTTGGCCCCCC
4._GC-01-116-6-13
GGAACCCCGGTTTTTTCCTTGGCCCCCC
5._GC-08-164-4-07
GGAACCCCGGTTTTTTCCTTGGCCCCCC
6._GC-08-164-4-07
GGAACCCCGGTTTTTTCCTTGGCCCCCC
7._GC-08-164-4-07
GGAACCCCGGTTTTTTCCTTGGCCCCCC
8._GC-08-164-4-07
GGAACCCCGGTTTTTTCCTTGGCCCCCC
9._GC-08-164-4-07
GGAACCCCGGTTTTTTCCTTGGCCCCCC
10._GC-08-164-4-07
GGAACCCCGGTTTTTTCCTTGGCCCCCC
11._RUQ_190
GG_____TTTT_TT-CCCCCC
12._GU_133_/C
_______TTCC__CC_CC
13._GU_133_/C
_______TTCC__CC_CC
14._GU_133_/C
_______TTCC__CC_CC
15._GU_133_/C
_______TTCC__CC_CC
16._GU_133_/C
_______TTCC__CC_CC
17._GU_133_/C
_______TTCC__CC_CC
18._GU_133_/C
_______TTCC__CC_CC
19._GU_133_/C
_______TTCC__CC_CC
20._GU_133_/C
_______TTCC__CC_CC
21._GU_133_/C
_______TTCC__CC_CC
22._GU_133_/C
_______TTCC__CC_CC
23._RUQ_190
_______TTCC__CC_CC
24._RUQ_190
GG_________GG___
25._RUQ_190
_______TT___GGCC_
26._GC-01-116-6-13
GGAAGG_GGAAAAAAGGAAGGGGGGGG
27._MITC-000670
GGAAGG_GGAAAAAAGGAAGGGGGGGG
 5758596061626364656667686970
_Input profile
AAGGGGAAGGGGAACCCCGGCCACGGCC
1._GC-01-116-6-13
AAGGGGAAGGGGAACCCCGGCCACGGCC
2._GC-01-116-6-13
AAGGGGAAGGGGAACCCCGGCCACGGCC
3._GC-01-116-6-13
AAGGGGAAGGGGAACCCCGGCCACGGCC
4._GC-01-116-6-13
AAGGGGAAGGGGAACCCCGGCCACGGCC
5._GC-08-164-4-07
AAGGGGAAGGGGAACCCCGGCCACGGCC
6._GC-08-164-4-07
AAGGGGAAGGGGAACCCCGGCCACGGCC
7._GC-08-164-4-07
AAGGGGAAGGGGAACCCCGGCCACGGCC
8._GC-08-164-4-07
AAGGGGAAGGGGAACCCCGGCCACGGCC
9._GC-08-164-4-07
_GGGGAAGGGGAACCCCGGCCACGGCC
10._GC-08-164-4-07
AAGGGGAAGGGGAACCCCGGCCACGGCC
11._RUQ_190
AA_GGAAGGGGAA_______
12._GU_133_/C
AAGG_AAGGGG___GGCC___
13._GU_133_/C
AAGG_AAGGGG___GGCC___
14._GU_133_/C
AAGG_AAGGGG___GGCC___
15._GU_133_/C
AAGG_AAGGGG___GGCC___
16._GU_133_/C
AAGG_AAGGGG___GGCC___
17._GU_133_/C
AAGG_AAGGGG___GGCC___
18._GU_133_/C
AAGG_AAGGGG___GGCC___
19._GU_133_/C
AAGG_AAGGGG___GGCC___
20._GU_133_/C
AAGG_AAGGGG___GGCC___
21._GU_133_/C
_GG_AAGGGG___GGCC___
22._GU_133_/C
AAGG_AAGGGG___GGCC___
23._RUQ_190
AAGG_AAGGGG___AACC___
24._RUQ_190
___AA_GGAA__AA____
25._RUQ_190
AA_GGAA____CC_____
26._GC-01-116-6-13
AAGGGGAACCCCAA___GGACGGCC
27._MITC-000670
AAGGGGAACCCCAA___GGACGGCC
 7172737475767778798081828384
_Input profile
CCGGAACGCCTTAACCCCCCCCGGCCCC
1._GC-01-116-6-13
CCGGAACGCCTTAACCCCCCCCGGCCCC
2._GC-01-116-6-13
CCGGAACGCCTTAACCCCCCCCGGCCCC
3._GC-01-116-6-13
CCGGAACGCCTTAACCCCCCCCGGCCCC
4._GC-01-116-6-13
CCGGAACGCCTTAACCCCCCCCGGCCCC
5._GC-08-164-4-07
CCGGAACGCCTTAACCCCCCCCGGCCCC
6._GC-08-164-4-07
CCGGAACGCCTTAACCCCCCCCGGCCCC
7._GC-08-164-4-07
CCGGAACGCCTTAACCCCCCCCGGCCCC
8._GC-08-164-4-07
CCGGAACGCCTTAACCCCCCCCGGCCCC
9._GC-08-164-4-07
CCGGAACGCCTTAACCCCCCCCGGCCCC
10._GC-08-164-4-07
CCGGAACGCCTTAACCCCCCCCGGCCCC
11._RUQ_190
__AACG__AACC___GGCCCC
12._GU_133_/C
__AACG___CCCCCC_GG_CC
13._GU_133_/C
__AACG___CCCCCC_GG_CC
14._GU_133_/C
__AACG___CCCCCC_GG_CC
15._GU_133_/C
__AACG___CCCCCC_GG_CC
16._GU_133_/C
__AACG___CCCCCC_GG_CC
17._GU_133_/C
__AACG___CCCCCC_GG_CC
18._GU_133_/C
__AACG___CCCCCC_GG_CC
19._GU_133_/C
__AACG___CCCCCC_GG_CC
20._GU_133_/C
__AACG___CCCCCC_GG_CC
21._GU_133_/C
__AACG___CCCCCC_GG_CC
22._GU_133_/C
__AACG___CCCCCC_GG_CC
23._RUQ_190
__AACG___CCCCCC_GG_CC
24._RUQ_190
__AACG__AA__CC__CC_
25._RUQ_190
___CG____CC_____
26._GC-01-116-6-13
CC_AACGGGTTAAGGGG_GG__GG
27._MITC-000670
CC_AACGGGTTAAGGGG_GG__GG
 8586            
_Input profile
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-01-116-6-13
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-01-116-6-13
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-01-116-6-13
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-01-116-6-13
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-08-164-4-07
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-08-164-4-07
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-08-164-4-07
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-08-164-4-07
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-08-164-4-07
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-08-164-4-07
AAGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._RUQ_190
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_133_/C
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_133_/C
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_133_/C
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_133_/C
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_133_/C
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_133_/C
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GU_133_/C
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GU_133_/C
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GU_133_/C
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GU_133_/C
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GU_133_/C
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._RUQ_190
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._RUQ_190
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._RUQ_190
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-116-6-13
TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._MITC-000670
TTGGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_133_/C GC-01-116-6-13

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

1._GU_133_/C GC-01-116-6-13

identical
85 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

2._GU_133_/C GC-01-116-6-13

identical
85 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
85 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

identical
85 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._GU_133_/C GC-08-164-4-07

identical
85 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_133_/C GC-08-164-4-07

identical
85 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._GU_133_/C GC-08-164-4-07

identical
85 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._GU_133_/C GC-08-164-4-07

identical
84 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._GU_133_/C GC-08-164-4-07

identical
84 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._GU_133_/C GC-08-164-4-07

identical
84 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._GU_133_/C RUQ_190

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

13._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

14._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

15._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

16._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

17._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

18._GU_133_/C

identical
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

19._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

20._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

21._GU_133_/C

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

22._GU_133_/C

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

23._GU_133_/C RUQ_190

95.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

89.5 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._GU_133_/C RUQ_190

81.8 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

50 %
72 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

50 %
72 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP860
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP653
21TcSNP1149 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP1484
36TcSNP602 37TcSNP561 38TcSNP894 39TcSNP1063 40TcSNP1126
41TcSNP1270 42TcSNP606 43TcSNP329 44TcSNP689 45TcSNP944
46TcSNP1242 47TcSNP547 48TcSNP776 49TcSNP1309 50TcSNP151
51TcSNP1520 52TcSNP799 53TcSNP899 54TcSNP226 55TcSNP1439
56TcSNP1442 57TcSNP193 58TcSNP25 59TcSNP364 60TcSNP144
61TcSNP560 62TcSNP723 63TcSNP731 64TcSNP701 65TcSNP1041
66TcSNP645 67TcSNP917 68Tcm003s01336581 69Tcm003s07402719 70Tcm001s00947643
71Tcm006s26664133 72Tcm002s20575712 73TcSNP529 74TcSNP1458 75TcSNP60
76TcSNP430 77TcSNP823 78TcSNP619 79TcSNP994 80TcSNP1144
81TcSNP1156 82TcSNP469 83TcSNP999 84TcSNP242 85TcSNP154
86TcSNP240