SNP Profiles of GU-133C   View Data

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 Key

 1234567891011121314
_Input profile
AACCACGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTCCTTAA
2._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTCCTTAA
3._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTTCCTTAA
4._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTCCTTAA
5._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTCCTTAA
6._GC-08-164-4-07
AACCACGGGG_CCCCCCGGTTCCTTAA
7._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTCCTTAA
8._GC-08-164-4-07
AA_ACGGGGCCCCCCCCGGTTCCTTAA
9._GC-08-164-4-07
AACCACGGGGCCCCCCCCGGTTCCTTAA
10._GC-01-116-6-13
AACCACGGGGCCCCCCCCGGTT_TTAA
11._RUQ_190
_CCAC__CC_CC__TTCC__
12._GU_133_/C
AACCAC____CCCCGG_CC__
13._GU_133_/C
AACCAC____CCCCGG_CC__
14._GU_133_/C
AACCAC____CCCCGG_CC__
15._GU_133_/C
AACCAC____CCCCGG_CC__
16._GU_133_/C
AACCAC____CCCCGG_CC__
17._GU_133_/C
AACCAC____CCCCGG_CC__
18._GU_133_/C
AACCAC____CCCCGG_CC__
19._GU_133_/C
AACCAC____CCCCGG_CC__
20._GU_133_/C
AA_AC____CCCCGG_CC__
21._GU_133_/C
AACCAC____CCCCGG_CC__
22._GU_133_/C
AACCAC____CCCCGG____
23._RUQ_190
AACCAC____CCCCGG_CC__
24._RUQ_190
__AC__CC________
25._RUQ_190
__AC____CC___CC__
26._GC-01-116-6-13
AA_ACGGGG_GGGG_GGAAGGAATT
27._MITC-000670
AA_ACGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGATAACCGGAA
1._GC-01-116-6-13
CCGGGGCCGGTTAATTGGATAACCGGAA
2._GC-01-116-6-13
CCGGGGCCGGTTAATTGGATAACCGGAA
3._GC-01-116-6-13
CCGGGGCCGGTTAATTGGATAACCGGAA
4._GC-08-164-4-07
CCGGGGCCGGTTAATTGGATAACCGGAA
5._GC-08-164-4-07
CCGGGGCCGGTTAATTGGATAACCGGAA
6._GC-08-164-4-07
CCGGGGCCGGTTAATTGGATAACCGGAA
7._GC-08-164-4-07
CCGGGGCCGGTTAATTGGATAACCGGAA
8._GC-08-164-4-07
CCGGGGCCGGTTAATTGGATAACCGGAA
9._GC-08-164-4-07
CCGGGGCCGGTTAATTGGATAACCGGAA
10._GC-01-116-6-13
CCGGGGCCGG_AATTGGATAACCGGAA
11._RUQ_190
___CC____GG_AACCGG_
12._GU_133_/C
_GG__GG____ATAA_GGAA
13._GU_133_/C
_GG__GG____ATAA_GGAA
14._GU_133_/C
_GG__GG____ATAA_GGAA
15._GU_133_/C
_GG__GG____ATAA_GGAA
16._GU_133_/C
_GG__GG____ATAA_GGAA
17._GU_133_/C
_GG__GG____ATAA_GGAA
18._GU_133_/C
_GG__GG____ATAA_GGAA
19._GU_133_/C
_GG__GG____ATAA_GGAA
20._GU_133_/C
_GG__GG____ATAA_GGAA
21._GU_133_/C
_GG__GG____ATAA_GGAA
22._GU_133_/C
_GG__GG____ATAA_GGAA
23._RUQ_190
_GG__GG____ATAA_GGAA
24._RUQ_190
_GGCC_________GG_
25._RUQ_190
___GG_TT__GG_AACCCC_
26._GC-01-116-6-13
CCGGCC_GGAAGGAAGGATAAGGCCAA
27._MITC-000670
CCGGCC_GGAAGGAAGGATAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GC-01-116-6-13
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GC-01-116-6-13
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GC-01-116-6-13
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GC-08-164-4-07
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GC-08-164-4-07
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GC-08-164-4-07
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GC-08-164-4-07
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
8._GC-08-164-4-07
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GC-08-164-4-07
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
10._GC-01-116-6-13
TTTTGGCCCCGGTT__GGCCGGCCGG
11._RUQ_190
__GGCCCCGGTT__GGCC__GG
12._GU_133_/C
___CC_GGTT__GG____
13._GU_133_/C
___CC_GGTT__GG____
14._GU_133_/C
___CC_GGTT__GG____
15._GU_133_/C
___CC_GGTT__GG____
16._GU_133_/C
___CC_GGTT__GG____
17._GU_133_/C
___CC_GGTT__GG____
18._GU_133_/C
___CC_GGTT__GG____
19._GU_133_/C
___CC_GGTT__GG____
20._GU_133_/C
___CC_GGTT__GG____
21._GU_133_/C
___CC_GGTT__GG____
22._GU_133_/C
___CC_GGTT__GG____
23._RUQ_190
___CC_GGGT__GG____
24._RUQ_190
___CC_GG____CC___
25._RUQ_190
__GGCC____GG_CC___
26._GC-01-116-6-13
AAAAGGCCCCGGAA_CCGGGGGGGGCC
27._MITC-000670
AAAAGGCCCCGGAACCCCGGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-116-6-13
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-116-6-13
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-116-6-13
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-08-164-4-07
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-08-164-4-07
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-08-164-4-07
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-08-164-4-07
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-08-164-4-07
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GC-08-164-4-07
TTTTAAGGAACCCCGGGGTTTTTTCCTT
10._GC-01-116-6-13
TTTTAAGGAACCCC_GGTTTTTTCCTT
11._RUQ_190
TT__GG______TTTT_TT
12._GU_133_/C
_TT_________TTCC_
13._GU_133_/C
_TT_________TTCC_
14._GU_133_/C
_TT_________TTCC_
15._GU_133_/C
_TT_________TTCC_
16._GU_133_/C
_TT_________TTCC_
17._GU_133_/C
_TT_________TTCC_
18._GU_133_/C
_TT_________TTCC_
19._GU_133_/C
_TT_________TTCC_
20._GU_133_/C
_TT_________TTCC_
21._GU_133_/C
_TT_________TTCC_
22._GU_133_/C
_TT_________TTCC_
23._RUQ_190
_TT_________TTCC_
24._RUQ_190
___GG__________
25._RUQ_190
TT_AA________TT__
26._GC-01-116-6-13
_AA_GGAAGG_GGGGAAAAAAGGAA
27._MITC-000670
_AA_GGAAGG_GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGAACCCCGG
1._GC-01-116-6-13
GGCCCCCCAAGGGGAAGGGGAACCCCGG
2._GC-01-116-6-13
GGCCCCCCAAGGGGAAGGGGAACCCCGG
3._GC-01-116-6-13
GGCCCCCCAAGGGGAAGGGGAACCCCGG
4._GC-08-164-4-07
GGCCCCCCAAGGGGAAGGGGAACCCCGG
5._GC-08-164-4-07
GGCCCCCCAAGGGGAAGGGGAACCCCGG
6._GC-08-164-4-07
GGCCCCCCAAGGGGAAGGGGAACCCCGG
7._GC-08-164-4-07
GGCCCCCC_GGGGAAGGGGAACCCCGG
8._GC-08-164-4-07
GGCCCCCCAAGGGGAAGGGGAACCCCGG
9._GC-08-164-4-07
GGCCCCCCAAGGGGAAGGGGAACCCCGG
10._GC-01-116-6-13
GGCCCCCCAAGGGGAAGGGGAACCCCGG
11._RUQ_190
-CCCCCCAA_GGAAGGGGAA___
12._GU_133_/C
_CC_CCAAGG_AAGGGG___GG
13._GU_133_/C
_CC_CCAAGG_AAGGGG___GG
14._GU_133_/C
_CC_CCAAGG_AAGGGG___GG
15._GU_133_/C
_CC_CCAAGG_AAGGGG___GG
16._GU_133_/C
_CC_CCAAGG_AAGGGG___GG
17._GU_133_/C
_CC_CCAAGG_AAGGGG___GG
18._GU_133_/C
_CC_CCAAGG_AAGGGG___GG
19._GU_133_/C
_CC_CC_GG_AAGGGG___GG
20._GU_133_/C
_CC_CCAAGG_AAGGGG___GG
21._GU_133_/C
_CC_CCAAGG_AAGGGG___GG
22._GU_133_/C
_CC_CCAAGG_AAGGGG___GG
23._RUQ_190
_CC_CCAAGG_AAGGGG___AA
24._RUQ_190
GG______AA_GGAA__AA
25._RUQ_190
_GGCC_AA_GGAA____CC_
26._GC-01-116-6-13
GGGGGGGGAAGGGGAACCCCAA___
27._MITC-000670
GGGGGGGGAAGGGGAACCCCAA___
 7172737475767778798081828384
_Input profile
CCACGGCCCCGGAACGCCTTAACCCCCC
1._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
2._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
3._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
4._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
5._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
6._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
7._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
8._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
9._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
10._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
11._RUQ_190
______AACG__AACC__
12._GU_133_/C
CC_____AACG___CCCCCC
13._GU_133_/C
CC_____AACG___CCCCCC
14._GU_133_/C
CC_____AACG___CCCCCC
15._GU_133_/C
CC_____AACG___CCCCCC
16._GU_133_/C
CC_____AACG___CCCCCC
17._GU_133_/C
CC_____AACG___CCCCCC
18._GU_133_/C
CC_____AACG___CCCCCC
19._GU_133_/C
CC_____AACG___CCCCCC
20._GU_133_/C
CC_____AACG___CCCCCC
21._GU_133_/C
CC_____AACG___CCCCCC
22._GU_133_/C
CC_____AACG___CCCCCC
23._RUQ_190
CC_____AACG___CCCCCC
24._RUQ_190
______AACG__AA__CC
25._RUQ_190
_______CG____CC_
26._GC-01-116-6-13
GGACGGCCCC_AACGGGTTAAGGGG_
27._MITC-000670
GGACGGCCCC_AACGGGTTAAGGGG_
 8586878889909192      
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-116-6-13
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-116-6-13
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-116-6-13
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-08-164-4-07
CCGGCCCC_TTAAGGX_XX_XX_XX_XX_XX_X
10._GC-01-116-6-13
CCGGCCCC__AAGGX_XX_XX_XX_XX_XX_X
11._RUQ_190
_GGCCCCTT___X_XX_XX_XX_XX_XX_X
12._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
13._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
14._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
15._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
16._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
17._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
18._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
19._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
20._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
21._GU_133_/C
_GG_CC_TT__X_XX_XX_XX_XX_XX_X
22._GU_133_/C
_GG_CC____X_XX_XX_XX_XX_XX_X
23._RUQ_190
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
24._RUQ_190
__CC_TT___X_XX_XX_XX_XX_XX_X
25._RUQ_190
________X_XX_XX_XX_XX_XX_X
26._GC-01-116-6-13
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X
27._MITC-000670
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_133_/C GC-01-116-6-13

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._GU_133_/C GC-01-116-6-13

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

2._GU_133_/C GC-01-116-6-13

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._GU_133_/C GC-08-164-4-07

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._GU_133_/C GC-08-164-4-07

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._GU_133_/C GC-08-164-4-07

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._GU_133_/C GC-08-164-4-07

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._GU_133_/C GC-08-164-4-07

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

9._GU_133_/C GC-08-164-4-07

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._GU_133_/C GC-01-116-6-13

identical
85 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

11._GU_133_/C RUQ_190

identical
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

13._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

14._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

15._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

16._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

17._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

18._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

19._GU_133_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

20._GU_133_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

21._GU_133_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

22._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

23._GU_133_/C RUQ_190

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

90 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._GU_133_/C RUQ_190

87.5 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

48.1 %
77 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

47.4 %
78 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240