SNP Profiles of PNG-296 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AA	CC	AC	GG	AG	CC	CC	CT	CC	GG	TT	CC	CT
1._GC-01-113-6-10	AA	AA	CC	AC	GG	AG	CC	CC	CT	CC	GG	TT	CC	CT
2._PNG_296	AA	AA	CC	AC	_	_	_	_	CT	CC	GG	_	CC	_
3._PNG_296	AA	AA	CC	AC	_	_	_	_	CT	CC	GG	_	CC	_
4._RUQ_1299	AA	AC	CC	AC	_	_	_	_	CT	CC	GG	_	CC	_
5._RUQ_1299	_	_	CC	AA	_	_	TT	_	CT	_	_	TT	CC	_
6._RUQ_1299	_	_	_	AC	_	_	TT	_	_	_	_	_	_	_
7._PNG_296	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
8._PNG_296	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
9._PNG_296	AA	AA	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
10._GC-01-113-6-10	AA	AA	CT	AA	GG	AG	CT	CC	CT	CC	GG	CT	CT	TT
11._GC-01-113-6-10	AA	AA	CT	AA	GG	AG	CT	CC	CT	CC	GG	CT	CT	TT
12._GC-01-113-6-10	AA	AA	CT	AA	GG	AG	CT	CC	CT	CC	GG	CT	CT	TT
13._RUQ_1299	AA	AC	_	AC	GG	AG	_	GG	AG	_	GG	AA	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	AG	GG	CG	GG	CC	AG	TT	GG	TT	AA	CC	CC
1._GC-01-113-6-10	AA	AC	AG	GG	CG	GG	CC	AG	TT	GG	TT	AA	CC	CC
2._PNG_296	_	_	AG	_	_	GG	_	_	_	_	TT	AA	_	CC
3._PNG_296	_	_	AG	_	_	GG	_	_	_	_	TT	AA	_	CC
4._RUQ_1299	_	_	AG	_	_	GG	_	_	_	_	TT	AA	_	CC
5._RUQ_1299	_	_	_	_	CG	_	_	_	_	GG	_	AA	CC	CC
6._RUQ_1299	_	_	AG	TT	_	_	_	_	_	_	_	_	_	CC
7._PNG_296	_	_	AA	_	_	GG	_	_	_	_	TT	AA	_	CC
8._PNG_296	_	_	AA	_	_	GG	_	_	_	_	TT	AA	_	CC
9._PNG_296	_	_	AA	_	_	GG	_	_	_	_	TT	AA	_	CC
10._GC-01-113-6-10	AA	AA	AA	GG	CG	GG	CC	GG	TT	GG	TT	AA	CC	CC
11._GC-01-113-6-10	AA	AA	AA	GG	CG	GG	CC	GG	TT	GG	TT	AA	CC	CC
12._GC-01-113-6-10	AA	AA	AA	GG	CG	GG	CC	GG	_	GG	TT	AA	CC	CC
13._RUQ_1299	TT	AC	AG	CC	_	GG	GG	AA	AA	GG	TT	AA	GG	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GG	GG	GG	CC	AG	GG	GG	TT	GG	CC	GG	CC
1._GC-01-113-6-10	AA	TT	GG	GG	GG	CC	AG	GG	GG	TT	GG	CC	GG	CC
2._PNG_296	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
3._PNG_296	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
4._RUQ_1299	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
5._RUQ_1299	_	_	_	GG	GG	CC	AG	GG	_	_	GG	CC	_	_
6._RUQ_1299	_	_	_	_	GG	_	AG	_	_	_	_	CC	_	_
7._PNG_296	AA	_	_	_	GG	_	AG	GG	_	_	AG	_	_	_
8._PNG_296	AA	_	_	_	GG	_	AG	GG	_	_	AG	_	_	_
9._PNG_296	AA	_	_	_	GG	_	AG	GG	_	_	AG	_	_	_
10._GC-01-113-6-10	AA	TT	GG	GG	GG	CC	AG	GG	GG	TT	AG	CT	AG	CC
11._GC-01-113-6-10	AA	TT	GG	GG	GG	CC	AG	GG	GG	TT	AG	CT	AG	CC
12._GC-01-113-6-10	AA	TT	GG	GG	GG	CC	AG	GG	GG	TT	AG	CT	AG	CC
13._RUQ_1299	AA	AA	CC	GG	GG	CC	AG	CC	CC	AA	GG	GG	GG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GT	AT	CC	GG	AG	AG	CT	AC	GG	GG	GG	TT	CC	CC
1._GC-01-113-6-10	GT	AT	CC	GG	AG	AG	CT	AC	GG	GG	GG	TT	CC	CC
2._PNG_296	_	_	CC	_	_	_	_	_	_	_	_	_	CC	CC
3._PNG_296	_	_	CC	_	_	_	_	_	_	_	_	_	CC	CC
4._RUQ_1299	_	_	CC	_	_	_	_	_	_	_	_	_	CC	CC
5._RUQ_1299	GT	AT	_	_	AG	_	_	_	_	_	_	TT	CC	_
6._RUQ_1299	_	_	_	_	AG	_	_	_	_	_	_	_	_	_
7._PNG_296	_	_	CC	_	_	_	_	_	_	_	_	_	CC	CC
8._PNG_296	_	_	CC	_	_	_	_	_	_	_	_	_	CC	CC
9._PNG_296	_	_	CC	_	_	_	_	_	_	_	_	_	CC	CC
10._GC-01-113-6-10	GT	AT	CC	AG	GG	GG	TT	CC	GG	GG	GG	TT	CC	CC
11._GC-01-113-6-10	GT	AT	CC	AG	GG	GG	TT	CC	GG	GG	GG	TT	CC	CC
12._GC-01-113-6-10	GT	AT	CC	AG	GG	GG	TT	CC	GG	GG	GG	TT	CC	CC
13._RUQ_1299	AC	_	GG	_	AG	AG	AG	_	GG	GG	CC	AA	GG	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	GG	GG	CC	CT	AA	GG	AG	AC	AA	TT	GG	GG	TT
1._GC-01-113-6-10	TT	GG	GG	CC	CT	AA	GG	AG	AC	AA	TT	GG	GG	TT
2._PNG_296	_	_	GG	_	CT	AA	GG	_	AC	AA	TT	GG	_	_
3._PNG_296	_	_	GG	_	CT	AA	GG	_	AC	AA	TT	GG	_	_
4._RUQ_1299	_	_	GG	_	CT	AA	GG	_	AC	AA	TT	GG	_	_
5._RUQ_1299	TT	GG	GG	CC	CT	AA	_	AG	AC	AA	TT	GG	GG	_
6._RUQ_1299	_	GG	_	_	_	_	_	_	AC	AA	_	GG	GG	_
7._PNG_296	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GG	_	_
8._PNG_296	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GG	_	_
9._PNG_296	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GG	_	_
10._GC-01-113-6-10	TT	GG	CG	CC	CT	AA	GG	AG	AA	AG	TT	GG	GG	TT
11._GC-01-113-6-10	TT	GG	CG	CC	CT	AA	GG	AG	AA	AG	TT	GG	GG	TT
12._GC-01-113-6-10	TT	GG	CG	CC	CT	AA	GG	AG	AA	AG	TT	GG	GG	TT
13._RUQ_1299	AA	GG	CC	GG	AG	AA	GG	AG	AC	AA	AA	CC	GG	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	GG	AA	TT	CC	AG	CC	AA	AG	CC	CC	CT	AA	AC	CT
1._GC-01-113-6-10	GG	AA	TT	CC	AG	CC	AA	AG	CC	CC	CT	AA	AC	CT
2._PNG_296	_	AA	TT	_	_	_	_	_	CC	CC	_	_	_	CT
3._PNG_296	_	AA	TT	_	_	_	_	_	CC	CC	_	_	_	CT
4._RUQ_1299	_	AA	TT	_	_	_	_	_	CC	CC	_	_	_	CT
5._RUQ_1299	_	_	_	_	_	_	_	_	CC	CC	_	_	AC	CT
6._RUQ_1299	_	AA	_	_	_	_	_	_	AC	CC	_	_	AC	_
7._PNG_296	_	AA	TT	_	_	_	_	_	CC	GG	_	_	_	CC
8._PNG_296	_	AA	TT	_	_	_	_	_	CC	GG	_	_	_	CC
9._PNG_296	_	AA	TT	_	_	_	_	_	CC	GG	_	_	_	CC
10._GC-01-113-6-10	CG	AA	TT	CC	AG	CC	AC	AA	CC	GG	CC	AA	CC	CC
11._GC-01-113-6-10	CG	AA	TT	CC	AG	CC	AC	AA	CC	GG	CC	AA	CC	CC
12._GC-01-113-6-10	CG	AA	TT	CC	AG	CC	AC	AA	CC	GG	CC	AA	CC	CC
13._RUQ_1299	_	_	AA	CC	AG	CC	AA	_	CC	GG	AG	AA	AC	AG

	85	86	87	88	89	90	91	92	93
_Input profile	CC	CT	AA	CC	CT	GT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X
1._GC-01-113-6-10	CC	CT	AA	CC	CT	GT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X
2._PNG_296	CC	CT	AA	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X
3._PNG_296	CC	CT	AA	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X
4._RUQ_1299	CC	CT	AA	_	CT	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X
5._RUQ_1299	_	_	AA	CC	CT	GT	_	_	_	X_X	X_X	X_X	X_X	X_X
6._RUQ_1299	_	CT	_	CC	_	GT	_	_	_	X_X	X_X	X_X	X_X	X_X
7._PNG_296	CC	CT	AG	_	CC	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X
8._PNG_296	CC	CT	AG	_	CC	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X
9._PNG_296	CC	CT	AG	_	CC	GT	TT	_	_	X_X	X_X	X_X	X_X	X_X
10._GC-01-113-6-10	CC	CT	AG	CT	CC	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
11._GC-01-113-6-10	CC	CT	AG	CT	CC	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
12._GC-01-113-6-10	CC	CT	AG	CT	CC	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X
13._RUQ_1299	GG	_	_	_	AG	AA	AA	AA	GG	X_X	X_X	X_X	X_X	X_X

Input profile: PNG_296 GC-01-113-6-10

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

1._PNG_296 GC-01-113-6-10

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

2._PNG_296

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1610 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

3._PNG_296

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1610 2

Dapeng Zhang, 2016

4._PNG_296 RUQ_1299

98.8 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

5._PNG_296 RUQ_1299

96.5 %
43 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._PNG_296 RUQ_1299

88.1 %
21 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

7._PNG_296

83.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1610 3

Dapeng Zhang, 2016

8._PNG_296

83.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1610 4

Dapeng Zhang, 2016

9._PNG_296

83.8 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1610 5

Dapeng Zhang, 2016

10._PNG_296 GC-01-113-6-10

82.8 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

11._PNG_296 GC-01-113-6-10

82.8 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

12._PNG_296 GC-01-113-6-10

82.6 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

13._PNG_296 RUQ_1299

48.1 %
79 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240