SNP Profiles of GU 175   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGTTCCCCCCGGTTCCTTAA
1._GC-01-100-5-17
AACCCCGGGGTTCCCCCCGGTTCCTTAA
2._GC-01-100-5-17
AACCCCGGGGTTCCCCCCGGTTCCTTAA
3._GC-01-100-5-17
AACCCCGGGGTTCCCCCCGGTTCCTTAA
4._GC-01-100-5-17
AACCCCGGGGTTCCCCCCGGTTCCTTAA
5._GC-01-100-5-17
AACCCCGGGGTTCCCCCCGGTTCCTTAA
6._GC-01-100-5-17
AACCCCGGGGTTCCCCCCGGTTCCTTAA
7._GC-05-097-2-48
AACCCCGGGGTTCCCCCCGGTTCCTTAA
8._GC-05-097-2-48
AACCCCGGGGTTCCCCCCGGTTCCTTAA
9._GC-05-097-2-48
AACCCCGGGGTTCCCCCCGGTTCCTTAA
10._GC-05-097-2-48
AACCCCGGGGTTCCCCCCGGTTCCTTAA
11._GC-01-100-5-17
AA_CCGGGG_GGGG_GGAAGGAATT
12._MITC-000401
AA_AAGGGG_GGGG_GGAAGGAAAT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GC-01-100-5-17
CCGGGGCCGGTTAATTGGTTAACCGGAA
2._GC-01-100-5-17
CCGGGGCCGGTTAATTGGTTAACCGGAA
3._GC-01-100-5-17
CCGGGGCCGGTTAATTGGTTAACCGGAA
4._GC-01-100-5-17
CCGGGGCCGGTTAATTGGTTAACCGGAA
5._GC-01-100-5-17
CCGGGGCCGGTTAATTGGTTAACCGGAA
6._GC-01-100-5-17
CCGGGGCCGGTTAATTGGTTAACCGGAA
7._GC-05-097-2-48
CCGGGGCCGGTTAATTGGTTAACCGGAA
8._GC-05-097-2-48
CCGGGGCCGGTTAATTGGTTAACCGGAA
9._GC-05-097-2-48
CCGGGGCCGGTTAATTGGTTAACCGGAA
10._GC-05-097-2-48
CCGGGGCCGGTTAATTGGTTAACCGGAA
11._GC-01-100-5-17
CCGGCC_GGAAAAAAGGTTAAGGCCAA
12._MITC-000401
CCAACC_CGAAAGAAAGTTATCGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCAATTGGGGGGCCAGCCGG
1._GC-01-100-5-17
TTTTGGCCCCAATTGGGGGGCCAGCCGG
2._GC-01-100-5-17
TTTTGGCCCCAATTGGGGGGCCAGCCGG
3._GC-01-100-5-17
TTTTGGCCCCAATTGGGGGGCCAGCCGG
4._GC-01-100-5-17
TTTTGGCCCCAATTGGGGGGCCAGCCGG
5._GC-01-100-5-17
TTTTGGCCCCAATTGGGGGGCCAGCCGG
6._GC-01-100-5-17
TTTTGGCCCCAATTGGGGGGCCAGCCGG
7._GC-05-097-2-48
TTTTGGCCCCAATTGGGGGGCCAGCCGG
8._GC-05-097-2-48
TTTTGGCCCCAATTGGGGGGCCAGCCGG
9._GC-05-097-2-48
TTTTGGCCCCAATTGGGGGGCCAGCCGG
10._GC-05-097-2-48
TTTTGGCCCCAATTGGGGGGCCAGCCGG
11._GC-01-100-5-17
AAAAGGCCCCAAAA_CCGGGGAGGGCC
12._MITC-000401
AACCGGCCCCAGACCCAAAAAAAGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-100-5-17
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-100-5-17
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-100-5-17
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-01-100-5-17
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-100-5-17
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-01-100-5-17
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-05-097-2-48
TTTT_GGAACCCCGGGGTTTTTTCCTT
8._GC-05-097-2-48
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GC-05-097-2-48
TTTTAAGGAACCCCGGGGTTTTTTCCTT
10._GC-05-097-2-48
TTTTAAGGAACCCCGGGGTTTTTTCCTT
11._GC-01-100-5-17
_AA_GGAAGG_GGGGAAAAAAGGAA
12._MITC-000401
_GG_GGAAGG_AGGGAAAGGGAAAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-01-100-5-17
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-01-100-5-17
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-01-100-5-17
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GC-01-100-5-17
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GC-01-100-5-17
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GC-01-100-5-17
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GC-05-097-2-48
GGCCCCCCAAGGGGAAGGGGGGAACCCC
8._GC-05-097-2-48
GGCCCCCCAAGGGGAAGGGGGGAACCCC
9._GC-05-097-2-48
GGCCCCCCAAGGGGAAGGGGGGAACCCC
10._GC-05-097-2-48
GGCCCCCCAAGGGGAAGGGGGGAACCCC
11._GC-01-100-5-17
GGGGGGGGAAGGGGAAGGCCCCAA__
12._MITC-000401
AACGAAGGAAGGAGCCAGAACCGG__
 7172737475767778798081828384
_Input profile
AACCAGCCCCGGAAGGCCTTAACCCCCC
1._GC-01-100-5-17
AACCAGCCCCGGAAGGCCTTAACCCCCC
2._GC-01-100-5-17
AACCAGCCCCGGAAGGCCTTAACCCCCC
3._GC-01-100-5-17
AACCAGCCCCGGAAGG_TTAACCCCCC
4._GC-01-100-5-17
AACCAGCCCCGGAAGGCCTTAACCCCCC
5._GC-01-100-5-17
AACCAGCCCCGGAAGGCCTTAACCCCCC
6._GC-01-100-5-17
AACCAGCCCCGGAAGGCCTTAACCCCCC
7._GC-05-097-2-48
AACCAGCCCCGGAAGGCCTTAACCCCCC
8._GC-05-097-2-48
AACCAGCCCCGGAAGGCCTTAACCCCCC
9._GC-05-097-2-48
AACCAGCCCCGGAAGGCCTTAACCCCCC
10._GC-05-097-2-48
AACCAGCCCCGGAAGGCCTTAACCCCCC
11._GC-01-100-5-17
_GGAGCCCC_AACCGGTTAAGGGG_
12._MITC-000401
_AAAGCCAA_CCCCGGTTACAGAA_
 8586878889909192      
_Input profile
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-100-5-17
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-100-5-17
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-100-5-17
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-100-5-17
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-100-5-17
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-100-5-17
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-05-097-2-48
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-05-097-2-48
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-05-097-2-48
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
10._GC-05-097-2-48
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
11._GC-01-100-5-17
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X
12._MITC-000401
AA__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_175 GC-01-100-5-17

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

1._GU_175 GC-01-100-5-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._GU_175 GC-01-100-5-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._GU_175 GC-01-100-5-17

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

4._GU_175 GC-01-100-5-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._GU_175 GC-01-100-5-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

6._GU_175 GC-01-100-5-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

7._GU_175 GC-05-097-2-48

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._GU_175 GC-05-097-2-48

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

9._GU_175 GC-05-097-2-48

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

10._GU_175 GC-05-097-2-48

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._GU_175 GC-01-100-5-17

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 17, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

12._GU_175 MITC-000401

33.3 %
78 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240