SNP Profiles of GU-123C View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	AA	CC
1._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	AA	CC
2._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	AA	CC
3._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	AA	CC
4._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	AA	CC
5._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	AA	CC
6._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	AA	CC
7._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	AA	CC
8._GU_123_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
9._GU_123_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
10._GU_123_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
11._GU_123_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
12._GU_123_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
13._GU_123_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
14._GU_123_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
15._GU_123_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
16._GU_123_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
17._GC-01-95-5-12	AA	_	CC	GG	GG	_	GG	GG	_	GG	AA	GG	TT	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA	TT
1._GC-01-095-5-12	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA	TT
2._GC-01-095-5-12	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA	TT
3._GC-01-095-5-12	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA	TT
4._GC-01-095-5-12	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA	TT
5._GC-01-095-5-12	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA	TT
6._GC-01-095-5-12	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA	TT
7._GC-01-095-5-12	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA	TT
8._GU_123_/C	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA	_
9._GU_123_/C	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA	_
10._GU_123_/C	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA	_
11._GU_123_/C	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA	_
12._GU_123_/C	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA	_
13._GU_123_/C	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA	_
14._GU_123_/C	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA	_
15._GU_123_/C	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA	_
16._GU_123_/C	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA	_
17._GC-01-95-5-12	GG	CC	_	GG	GG	AA	AA	GG	TT	AA	GG	CC	AA	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
1._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
2._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
3._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
4._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
5._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
6._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
7._GC-01-095-5-12	_	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
8._GU_123_/C	_	_	CC	_	AA	TT	_	_	GG	_	_	_	_	_
9._GU_123_/C	_	_	CC	_	AA	TT	_	_	GG	_	_	_	_	_
10._GU_123_/C	_	_	CC	_	AA	TT	_	_	GG	_	_	_	_	_
11._GU_123_/C	_	_	CC	_	AA	TT	_	_	GG	_	_	_	_	_
12._GU_123_/C	_	_	CC	_	AA	TT	_	_	GG	_	_	_	_	_
13._GU_123_/C	_	_	CC	_	AA	TT	_	_	GG	_	_	_	_	_
14._GU_123_/C	_	_	CC	_	AA	TT	_	_	GG	_	_	_	_	_
15._GU_123_/C	_	_	CC	_	AA	TT	_	_	GG	_	_	_	_	_
16._GU_123_/C	_	_	CC	_	AA	TT	_	_	GG	_	_	_	_	_
17._GC-01-95-5-12	AA	GG	CC	CC	AA	AA	CC	CC	GG	GG	AG	GG	CC	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
1._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
2._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
3._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
4._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
5._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
6._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
7._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
8._GU_123_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
9._GU_123_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
10._GU_123_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
11._GU_123_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
12._GU_123_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
13._GU_123_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
14._GU_123_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
15._GU_123_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
16._GU_123_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
17._GC-01-95-5-12	AA	_	GG	AA	GG	_	GG	GG	AA	AA	AA	GG	AA	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
1._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
2._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
3._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
4._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
5._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
6._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
7._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
8._GU_123_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	AA
9._GU_123_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	AA
10._GU_123_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	AA
11._GU_123_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	AA
12._GU_123_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	AA
13._GU_123_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	AA
14._GU_123_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	AA
15._GU_123_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	AA
16._GU_123_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	AA
17._GC-01-95-5-12	GG	GG	GG	AA	GG	GG	AA	GG	CC	CC	AA	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT	CC
1._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT	CC
2._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT	CC
3._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT	CC
4._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT	CC
5._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT	CC
6._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT	CC
7._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	_	TT	CT	CC
8._GU_123_/C	CC	_	_	_	_	_	AA	GG	_	_	_	TT	CT	CC
9._GU_123_/C	CC	_	_	_	_	_	AA	GG	_	_	_	TT	CT	CC
10._GU_123_/C	CC	_	_	_	_	_	AA	GG	_	_	_	TT	CT	CC
11._GU_123_/C	CC	_	_	_	_	_	AA	GG	_	_	_	TT	CT	CC
12._GU_123_/C	CC	_	_	_	_	_	AA	GG	_	_	_	TT	CT	CC
13._GU_123_/C	CC	_	_	_	_	_	AA	GG	_	_	_	TT	CT	CC
14._GU_123_/C	CC	_	_	_	_	_	AA	GG	_	_	_	TT	CT	CC
15._GU_123_/C	CC	_	_	_	_	_	AA	GG	_	_	_	TT	CT	CC
16._GU_123_/C	CC	_	_	_	_	_	AA	GG	_	_	_	TT	CT	CC
17._GC-01-95-5-12	GG	AA	GG	CC	CC	_	AA	CC	GG	TT	AA	AA	AG	_

	85	86	87	88	89	90	91	92
_Input profile	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-095-5-12	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-01-095-5-12	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-095-5-12	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-095-5-12	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-095-5-12	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-095-5-12	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-095-5-12	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
8._GU_123_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
9._GU_123_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
10._GU_123_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
11._GU_123_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
12._GU_123_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
13._GU_123_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
14._GU_123_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
15._GU_123_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
16._GU_123_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-95-5-12	GG	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: GU_123_/C GC-01-095-5-12

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

1._GU_123_/C GC-01-095-5-12

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

2._GU_123_/C GC-01-095-5-12

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

3._GU_123_/C GC-01-095-5-12

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

4._GU_123_/C GC-01-095-5-12

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

5._GU_123_/C GC-01-095-5-12

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._GU_123_/C GC-01-095-5-12

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

7._GU_123_/C GC-01-095-5-12

identical
90 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP4

8._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 13 > FP4

Dapeng Zhang, 2016

9._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 3

Dapeng Zhang, 2016

11._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 6

Dapeng Zhang, 2016

12._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 9

Dapeng Zhang, 2016

13._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 14

Dapeng Zhang, 2016

14._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 1 > FP

Dapeng Zhang, 2016

15._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 4 > FP3

Dapeng Zhang, 2016

16._GU_123_/C

identical
39 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: Q6_EXT_2 44

Dapeng Zhang, 2016

17._GU_123_/C GC-01-95-5-12

48.7 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 12, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP316	14	TcSNP521	15	TcSNP1062
16	TcSNP836	17	TcSNP878	18	TcSNP929	19	TcSNP413	20	TcSNP653
21	TcSNP1149	22	TcSNP174	23	TcSNP32	24	TcSNP372	25	TcSNP448
26	TcSNP872	27	TcSNP953	28	TcSNP1034	29	TcSNP1175	30	TcSNP1111
31	TcSNP577	32	TcSNP90	33	TcSNP998	34	TcSNP150	35	TcSNP28
36	TcSNP751	37	TcSNP1484	38	TcSNP602	39	TcSNP561	40	TcSNP894
41	TcSNP1063	42	TcSNP1126	43	TcSNP1270	44	TcSNP606	45	TcSNP329
46	TcSNP689	47	TcSNP944	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP776	52	TcSNP1309	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240