SNP Profiles of GU-171C View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
1._GC-01-094-5-11	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
2._GC-01-094-5-11	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
3._GC-01-094-5-11	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
4._GC-01-094-5-11	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
5._GC-01-094-5-11	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
6._GC-01-094-5-11	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
7._RUQ_195	_	CC	CC	_	_	CC	_	CC	_	_	TT	CC	_	_
8._GU_171_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
9._GU_171_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
10._GU_171_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
11._GU_171_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
12._GU_171_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
13._GU_171_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
14._GU_171_/C	AA	CC	CC	_	_	_	_	CC	CC	GG	_	CC	_	_
15._RUQ_195	AA	CC	CC	_	_	_	_	CC	CC	AG	_	CC	_	_
16._RUQ_195	_	_	CC	_	_	CC	_	_	_	_	_	_	_	_
17._GC-01-94-5-11	AA	_	CC	GG	GG	_	GG	GG	_	GG	AA	GG	AA	TT
18._GC-01-94-5-11	AA	_	CC	GG	GG	_	GG	GG	_	GG	AA	GG	AA	TT
19._RUQ_195	AA	_	CC	GG	GG	_	GG	GG	_	GG	AA	GG	AA	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
1._GC-01-094-5-11	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
2._GC-01-094-5-11	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
3._GC-01-094-5-11	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
4._GC-01-094-5-11	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
5._GC-01-094-5-11	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
6._GC-01-094-5-11	CC	GG	GG	CC	GG	TT	AA	TT	GG	TT	AA	CC	GG	AA
7._RUQ_195	_	_	_	CC	_	_	_	_	GG	_	AA	CC	GG	_
8._GU_171_/C	_	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA
9._GU_171_/C	_	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA
10._GU_171_/C	_	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA
11._GU_171_/C	_	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA
12._GU_171_/C	_	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA
13._GU_171_/C	_	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA
14._GU_171_/C	_	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA
15._RUQ_195	_	GG	_	_	GG	_	_	_	_	TT	AA	_	GG	AA
16._RUQ_195	_	GG	CC	_	_	_	_	_	_	_	_	_	GG	_
17._GC-01-94-5-11	CC	GG	CC	_	GG	AA	GG	AA	GG	TT	AA	GG	CC	AA
18._GC-01-94-5-11	CC	GG	CC	_	GG	AA	GG	AA	GG	TT	AA	GG	CC	AA
19._RUQ_195	CC	GG	CC	_	GG	AA	GG	AA	GG	TT	AA	GG	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	TT	GG	CC	AA	TT	GG	GT	AA	CC	GG	CC	GG	TT
1._GC-01-094-5-11	TT	TT	GG	CC	AA	TT	GG	GT	AA	CC	GG	CC	GG	TT
2._GC-01-094-5-11	TT	TT	GG	CC	AA	TT	GG	GT	AA	CC	GG	CC	GG	TT
3._GC-01-094-5-11	TT	TT	GG	CC	AA	TT	GG	GT	AA	CC	GG	CC	GG	TT
4._GC-01-094-5-11	TT	TT	GG	CC	AA	TT	GG	GT	AA	CC	GG	CC	GG	TT
5._GC-01-094-5-11	TT	TT	GG	CC	AA	TT	GG	GT	AA	CC	GG	CC	GG	TT
6._GC-01-094-5-11	TT	TT	GG	CC	AA	TT	GG	GT	AA	CC	GG	CC	GG	TT
7._RUQ_195	_	_	GG	CC	AA	TT	_	_	AA	CC	_	_	GG	TT
8._GU_171_/C	_	_	_	CC	AA	TT	_	_	AA	_	_	_	_	_
9._GU_171_/C	_	_	_	CC	AA	TT	_	_	AA	_	_	_	_	_
10._GU_171_/C	_	_	_	CC	AA	TT	_	_	AA	_	_	_	_	_
11._GU_171_/C	_	_	_	CC	AA	TT	_	_	AA	_	_	_	_	_
12._GU_171_/C	_	_	_	CC	AA	TT	_	_	AA	_	_	_	_	_
13._GU_171_/C	_	_	_	CC	AA	TT	_	_	AA	_	_	_	_	_
14._GU_171_/C	_	_	_	CC	AA	TT	_	_	AA	_	_	_	_	_
15._RUQ_195	_	_	_	CC	AA	TT	_	_	AG	_	_	_	_	_
16._RUQ_195	_	_	_	CC	AA	_	_	_	_	CC	_	_	_	_
17._GC-01-94-5-11	AA	AA	GG	CC	AA	AA	_	AC	AA	GG	GG	GG	CC	_
18._GC-01-94-5-11	AA	AA	GG	CC	AA	AA	CC	AC	AA	GG	GG	GG	CC	_
19._RUQ_195	AA	AA	GG	CC	AA	AA	CC	AC	AA	GG	GG	GG	CC	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
1._GC-01-094-5-11	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
2._GC-01-094-5-11	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
3._GC-01-094-5-11	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
4._GC-01-094-5-11	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
5._GC-01-094-5-11	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
6._GC-01-094-5-11	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
7._RUQ_195	_	_	GG	_	_	_	_	_	_	TT	TT	_	TT	GG
8._GU_171_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
9._GU_171_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
10._GU_171_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
11._GU_171_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
12._GU_171_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
13._GU_171_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
14._GU_171_/C	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
15._RUQ_195	TT	_	_	_	_	_	_	_	_	_	TT	CC	_	_
16._RUQ_195	_	_	GG	_	_	_	_	_	_	_	_	_	_	GG
17._GC-01-94-5-11	AA	_	GG	AA	GG	_	GG	GG	AA	AA	AA	GG	AA	GG
18._GC-01-94-5-11	AA	_	GG	AA	GG	_	GG	GG	AA	AA	AA	GG	AA	GG
19._RUQ_195	AA	_	GG	AA	GG	_	GG	GG	AA	AA	AA	GG	AA	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	GG
1._GC-01-094-5-11	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	GG
2._GC-01-094-5-11	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	GG
3._GC-01-094-5-11	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	GG
4._GC-01-094-5-11	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	GG
5._GC-01-094-5-11	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	GG
6._GC-01-094-5-11	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	GG
7._RUQ_195	CC	CC	CC	AA	_	GG	AA	GG	GG	GG	AA	_	_	_
8._GU_171_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	GG
9._GU_171_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	GG
10._GU_171_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	GG
11._GU_171_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	GG
12._GU_171_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	GG
13._GU_171_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	GG
14._GU_171_/C	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	GG
15._RUQ_195	CC	_	CC	AA	GG	_	AA	GG	GG	GG	_	_	_	AA
16._RUQ_195	_	_	_	_	_	_	AA	GG	_	GG	AA	_	_	AA
17._GC-01-94-5-11	GG	GG	GG	AA	GG	GG	AA	GG	CC	CC	AA	_	_	_
18._GC-01-94-5-11	GG	GG	GG	AA	GG	GG	AA	GG	CC	CC	AA	_	_	_
19._RUQ_195	GG	GG	GG	AA	GG	GG	AA	GG	CC	CC	AA	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	CC	GG	CC	CC	GG	AA	GG	CC	TT	AA	CC	TT	CC
1._GC-01-094-5-11	CC	CC	GG	CC	CC	GG	AA	GG	CC	TT	AA	CC	TT	CC
2._GC-01-094-5-11	CC	CC	GG	CC	CC	GG	AA	GG	CC	TT	AA	CC	TT	CC
3._GC-01-094-5-11	CC	CC	GG	CC	CC	GG	AA	GG	CC	TT	AA	CC	TT	CC
4._GC-01-094-5-11	CC	CC	GG	CC	CC	GG	AA	GG	CC	TT	AA	CC	TT	CC
5._GC-01-094-5-11	CC	CC	GG	CC	CC	GG	AA	GG	CC	TT	AA	CC	TT	CC
6._GC-01-094-5-11	CC	CC	GG	CC	CC	GG	AA	GG	CC	TT	AA	CC	TT	CC
7._RUQ_195	_	_	_	_	_	_	AA	GG	_	_	AA	CC	_	_
8._GU_171_/C	CC	_	_	_	_	_	AA	GG	_	_	_	CC	TT	CC
9._GU_171_/C	CC	_	_	_	_	_	AA	GG	_	_	_	CC	TT	CC
10._GU_171_/C	CC	_	_	_	_	_	AA	GG	_	_	_	CC	TT	CC
11._GU_171_/C	CC	_	_	_	_	_	AA	GG	_	_	_	CC	TT	CC
12._GU_171_/C	CC	_	_	_	_	_	AA	GG	_	_	_	CC	TT	CC
13._GU_171_/C	CC	_	_	_	_	_	AA	GG	_	_	_	CC	TT	CC
14._GU_171_/C	CC	_	_	_	_	_	AA	GG	_	_	_	CC	TT	CC
15._RUQ_195	CC	_	_	_	_	_	AA	GG	_	_	_	CC	TT	CC
16._RUQ_195	_	_	_	_	_	_	_	GG	_	_	AA	_	_	CC
17._GC-01-94-5-11	GG	CC	GG	CC	CC	_	AA	CC	GG	TT	AA	GG	AA	_
18._GC-01-94-5-11	GG	CC	GG	CC	CC	_	AA	CC	GG	TT	AA	GG	AA	_
19._RUQ_195	GG	CC	GG	CC	CC	_	AA	CC	GG	TT	AA	GG	AA	_

	85	86	87	88	89	90	91	92
_Input profile	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-094-5-11	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-01-094-5-11	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-094-5-11	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-094-5-11	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-094-5-11	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-094-5-11	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
7._RUQ_195	_	AG	CC	CC	TT	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X
8._GU_171_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
9._GU_171_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
10._GU_171_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
11._GU_171_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
12._GU_171_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
13._GU_171_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
14._GU_171_/C	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
15._RUQ_195	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X	X_X
16._RUQ_195	_	_	CC	_	TT	_	_	_	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-94-5-11	GG	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-01-94-5-11	GG	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X
19._RUQ_195	GG	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: GU_171_/C GC-01-094-5-11

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

1._GU_171_/C GC-01-094-5-11

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

2._GU_171_/C GC-01-094-5-11

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

3._GU_171_/C GC-01-094-5-11

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

4._GU_171_/C GC-01-094-5-11

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

5._GU_171_/C GC-01-094-5-11

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

6._GU_171_/C GC-01-094-5-11

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

7._GU_171_/C RUQ_195

identical
42 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

8._GU_171_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 2 > FP

Dapeng Zhang, 2016

9._GU_171_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._GU_171_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 9

Dapeng Zhang, 2016

11._GU_171_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 12

Dapeng Zhang, 2016

12._GU_171_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 14

Dapeng Zhang, 2016

13._GU_171_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 1 > FP

Dapeng Zhang, 2016

14._GU_171_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1511 10 > F

Dapeng Zhang, 2016

15._GU_171_/C RUQ_195

94.9 %
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

16._GU_171_/C RUQ_195

90 %
20 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

17._GU_171_/C GC-01-94-5-11

46.8 %
77 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1

Notes: Brazil_Selections_Poss_grandparent

18._GU_171_/C GC-01-94-5-11

46.2 %
78 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 11, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

19._GU_171_/C RUQ_195

46.2 %
78 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP1062	17	TcSNP836	18	TcSNP878	19	TcSNP929	20	TcSNP413
21	TcSNP653	22	TcSNP1149	23	TcSNP174	24	TcSNP32	25	TcSNP372
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP998	34	TcSNP150	35	TcSNP28
36	TcSNP751	37	TcSNP1484	38	TcSNP602	39	TcSNP561	40	TcSNP894
41	TcSNP1063	42	TcSNP1126	43	TcSNP1270	44	TcSNP606	45	TcSNP329
46	TcSNP689	47	TcSNP944	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP776	52	TcSNP1309	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240