SNP Profiles of GU 147 /H   View Data

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 Key

 1234567891011121314
_Input profile
AACCAAGGGGCTCCCCCCGGTTCCTTAA
1._GU_147_/H
AACCAA____CCCCGG_CC__
2._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
3._GU_147_/H
AACCAA____CCCCGG_CC__
4._GU_147_/H
AACCAA____CCCCGG_CC__
5._GU_147_/H
AACCAA____CCCCGG_CC__
6._GU_147_/H
AACCAA____CCCCGG_CC__
7._GU_147_/H
AACCAA____CCCCGG_CC__
8._GU_147_/H
AACCAA____CCCCGG_CC__
9._GU_147_/H
AACCAA____CCCCGG_CC__
10._GU_147_/H
AACCAA____CCCCGG_CC__
11._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
12._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
13._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
14._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
15._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
16._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
17._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
18._RUQ_222
AACCAA____CCCCGG_CC__
19._RUQ_222
_CCAA__CC_CC__TTCC__
20._GC-01-80-4-16
AA_AAGGGG_GGGG_GGAAGGAATT
21._RUQ_222
AA_CCGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGCTAATTGGATAACCGGAA
1._GU_147_/H
_GG__GG____ATAA_GGAA
2._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
3._GU_147_/H
_GG__GG____ATAA_GGAA
4._GU_147_/H
_GG__GG____ATAA_GGAA
5._GU_147_/H
_GG__GG____ATAA_GGAA
6._GU_147_/H
_GG__GG____ATAA_GGAA
7._GU_147_/H
_GG__GG____ATAA_GGAA
8._GU_147_/H
_GG__GG____ATAA_GGAA
9._GU_147_/H
_GG__GG____ATAA_GGAA
10._GU_147_/H
_GG__GG____ATAA_GGAA
11._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
12._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
13._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
14._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
15._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
16._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
17._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
18._RUQ_222
_GG__GG____ATAA_GGAA
19._RUQ_222
___CC____GG_AACCGG_
20._GC-01-80-4-16
CCGGCC_GGAGGGAAGGATAAGGCCAA
21._RUQ_222
CCGGCC_GGAAAGAAGGATAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GU_147_/H
___CC_GGTT__GG____
2._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GU_147_/H
___CC_GGTT__GG____
4._GU_147_/H
___CC_GGTT__GG____
5._GU_147_/H
___CC_GGTT__GG____
6._GU_147_/H
___CC_GGTT__GG____
7._GU_147_/H
___CC_GGTT__GG____
8._GU_147_/H
___CC_GGTT__GG____
9._GU_147_/H
___CC_GGTT__GG____
10._GU_147_/H
___CC_GGTT__GG____
11._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
12._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
13._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
14._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
15._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
16._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
17._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
18._RUQ_222
___CC_GGTT__GG____
19._RUQ_222
__GGCCCCGGTT__GGCC__GG
20._GC-01-80-4-16
AAAAGGCCCCGGAA_CCGGGGGGGGCC
21._RUQ_222
AAAAGGCCCCAGAACCACAGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GU_147_/H
_TT_________TTCC_
2._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GU_147_/H
_TT_________TTCC_
4._GU_147_/H
_TT_________TTCC_
5._GU_147_/H
_TT_________TTCC_
6._GU_147_/H
_TT_________TTCC_
7._GU_147_/H
_TT_________TTCC_
8._GU_147_/H
_TT_________TTCC_
9._GU_147_/H
_TT_________TTCC_
10._GU_147_/H
_TT_________TTCC_
11._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
12._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
13._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
14._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
15._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
16._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
17._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
18._RUQ_222
_TT_________TTCC_
19._RUQ_222
TT__GG______TTTT_TT
20._GC-01-80-4-16
_AA_GGAAGG_GGGGAAAAAAGGAA
21._RUQ_222
_AA_GGAAGG_GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GU_147_/H
_CC_CCAAGG_AAGGGGGG___
2._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GU_147_/H
_CC_CCAAGG_AAGGGGGG___
4._GU_147_/H
_CC_CCAAGG_AAGGGGGG___
5._GU_147_/H
_CC_CCAAGG__GGGGGG___
6._GU_147_/H
_CC_CCAAGG_AAGGGGGG___
7._GU_147_/H
_CC_CCAAGG_AAGGGGGG___
8._GU_147_/H
_CC_CCAAGG_AAGGGGGG___
9._GU_147_/H
_CC_CCAAGG_AAGGGGGG___
10._GU_147_/H
_CC_CCAAGG_AAGGGGGG___
11._GC-01-080-4-16
GGCCCCCCAAGGGG_GGGGGGAACCCC
12._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
13._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
14._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
15._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
16._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
17._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
18._RUQ_222
_CC_CCAAGG_AAGGGGGG___
19._RUQ_222
-CCCCCCAA_GGAAGGGGGGAA__
20._GC-01-80-4-16
GGGGGGGGAAGGGGAAGGCCCCAA__
21._RUQ_222
GGGGGGGGAAGGGGAAGGCCCCAA__
 7172737475767778798081828384
_Input profile
GGCCAAGGCCCCGGAACCCCTTAACTCC
1._GU_147_/H
GGCC_____AACC___CTCC
2._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
3._GU_147_/H
GGCC_____AACC___CTCC
4._GU_147_/H
GGCC_____AACC___CTCC
5._GU_147_/H
GGCC_____AACC___CTCC
6._GU_147_/H
GGCC_____AACC___CTCC
7._GU_147_/H
GGCC_____AACC___CTCC
8._GU_147_/H
GGCC_____AACC___CTCC
9._GU_147_/H
GGCC_____AACC___CTCC
10._GU_147_/H
GGCC_____AACC___CTCC
11._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
12._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
13._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
14._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
15._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
16._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
17._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
18._RUQ_222
AACC_____AACC___CTCC
19._RUQ_222
_______AACC__AACT_
20._GC-01-80-4-16
_GGAAGGCCCC_AAGGGGTTAAAGGG
21._RUQ_222
_GGAAAACCCC_AACCGGTTAAGGAG
 858687888990919293     
_Input profile
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GU_147_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
2._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GU_147_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
4._GU_147_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
5._GU_147_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
6._GU_147_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
7._GU_147_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
8._GU_147_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
9._GU_147_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
10._GU_147_/H
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
11._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
12._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
13._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
15._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
16._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
17._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
18._RUQ_222
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
19._RUQ_222
__GGCCCCTT___X_XX_XX_XX_XX_X
20._GC-01-80-4-16
_GG__GGAAAATTGGX_XX_XX_XX_XX_X
21._RUQ_222
_GG__GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_147_/H GC-01-080-4-16

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

1._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

2._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

3._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

4._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

5._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

6._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

7._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

8._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

9._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

10._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

14._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

17._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._GU_147_/H RUQ_222

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._GU_147_/H RUQ_222

95.3 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._GU_147_/H GC-01-80-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._GU_147_/H RUQ_222

44.9 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240