SNP Profiles of GU%20147%20/H   View Data

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 Key

 1234567891011121314
_Input profile
AACCAAGGGGCTCCCCCCGGTTCCTTAA
1._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
2._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
3._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
4._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
5._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
6._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
7._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
8._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
9._GU_147_/H
AACCAA____CCCCGG_CC__
10._GU_147_/H
AACCAA____CCCCGG_CC__
11._GU_147_/H
AACCAA____CCCCGG_CC__
12._GU_147_/H
AACCAA____CCCCGG_CC__
13._GU_147_/H
AACCAA____CCCCGG_CC__
14._GU_147_/H
AACCAA____CCCCGG_CC__
15._GU_147_/H
AACCAA____CCCCGG_CC__
16._GU_147_/H
AACCAA____CCCCGG_CC__
17._GU_147_/H
AACCAA____CCCCGG_CC__
18._RUQ_222
_CCAA__CC_CC__TTCC__
19._RUQ_222
AACCAA____CCCCGG_CC__
20._RUQ_222
__AA__CC________
21._GC-01-80-4-16
AA_AAGGGG_GGGG_GGAAGGAATT
22._RUQ_222
AA_CCGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGCTAATTGGATAACCGGAA
1._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
2._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
3._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
4._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
5._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
6._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
7._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
8._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
9._GU_147_/H
_GG__GG____ATAA_GGAA
10._GU_147_/H
_GG__GG____ATAA_GGAA
11._GU_147_/H
_GG__GG____ATAA_GGAA
12._GU_147_/H
_GG__GG____ATAA_GGAA
13._GU_147_/H
_GG__GG____ATAA_GGAA
14._GU_147_/H
_GG__GG____ATAA_GGAA
15._GU_147_/H
_GG__GG____ATAA_GGAA
16._GU_147_/H
_GG__GG____ATAA_GGAA
17._GU_147_/H
_GG__GG____ATAA_GGAA
18._RUQ_222
___CC____GG_AACCGG_
19._RUQ_222
_GG__GG____ATAA_GGAA
20._RUQ_222
_GGCT_________GG_
21._GC-01-80-4-16
CCGGCC_GGAGGGAAGGATAAGGCCAA
22._RUQ_222
CCGGCC_GGAAAGAAGGATAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
8._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GU_147_/H
___CC_GGTT__GG____
10._GU_147_/H
___CC_GGTT__GG____
11._GU_147_/H
___CC_GGTT__GG____
12._GU_147_/H
___CC_GGTT__GG____
13._GU_147_/H
___CC_GGTT__GG____
14._GU_147_/H
___CC_GGTT__GG____
15._GU_147_/H
___CC_GGTT__GG____
16._GU_147_/H
___CC_GGTT__GG____
17._GU_147_/H
___CC_GGTT__GG____
18._RUQ_222
__GGCCCCGGTT__GGCC__GG
19._RUQ_222
___CC_GGTT__GG____
20._RUQ_222
___CC_GG____CC___
21._GC-01-80-4-16
AAAAGGCCCCGGAA_CCGGGGGGGGCC
22._RUQ_222
AAAAGGCCCCAGAACCACAGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GU_147_/H
_TT_________TTCC_
10._GU_147_/H
_TT_________TTCC_
11._GU_147_/H
_TT_________TTCC_
12._GU_147_/H
_TT_________TTCC_
13._GU_147_/H
_TT_________TTCC_
14._GU_147_/H
_TT_________TTCC_
15._GU_147_/H
_TT_________TTCC_
16._GU_147_/H
_TT_________TTCC_
17._GU_147_/H
_TT_________TTCC_
18._RUQ_222
TT__GG______TTTT_TT
19._RUQ_222
_TT_________TTCC_
20._RUQ_222
___GG__________
21._GC-01-80-4-16
_AA_GGAAGG_GGGGAAAAAAGGAA
22._RUQ_222
_AA_GGAAGG_GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGGGGGGGAACCCCGG
1._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
2._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
3._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
4._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
5._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
6._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
7._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
8._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
9._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
10._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
11._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
12._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
13._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
14._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
15._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
16._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
17._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
18._RUQ_222
-CCCCCCAA_GGGGGGGGAA___
19._RUQ_222
_CC_CCAAGG_GGGGGG___AA
20._RUQ_222
GG______GG_GGAA__AA
21._GC-01-80-4-16
GGGGGGGGAAGGGGGGCCCCAA___
22._RUQ_222
GGGGGGGGAAGGGGGGCCCCAA___
 7172737475767778798081828384
_Input profile
CCAAGGCCCCGGAACCCCTTAACTCCCC
1._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
2._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
3._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
4._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
5._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
6._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
7._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
8._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
9._GU_147_/H
CC_____AACC___CTCCCC
10._GU_147_/H
CC_____AACC___CTCCCC
11._GU_147_/H
CC_____AACC___CTCCCC
12._GU_147_/H
CC_____AACC___CTCCCC
13._GU_147_/H
CC_____AACC___CTCCCC
14._GU_147_/H
CC_____AACC___CTCCCC
15._GU_147_/H
CC_____AACC___CTCCCC
16._GU_147_/H
CC_____AACC___CTCCCC
17._GU_147_/H
CC_____AACC___CTCCCC
18._RUQ_222
______AACC__AACT__
19._RUQ_222
CC_____AACC___CTCCCC
20._RUQ_222
______AACC__AA__CC
21._GC-01-80-4-16
GGAAGGCCCC_AAGGGGTTAAAGGG_
22._RUQ_222
GGAAAACCCC_AACCGGTTAAGGAG_
 8586878889909192      
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
10._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
11._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
12._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
13._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
14._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
15._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
16._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
17._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
18._RUQ_222
_GGCCCCTT___X_XX_XX_XX_XX_XX_X
19._RUQ_222
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
20._RUQ_222
__CC_TT___X_XX_XX_XX_XX_XX_X
21._GC-01-80-4-16
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X
22._RUQ_222
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_147_/H GC-01-080-4-16

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

3._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

7._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

9._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

10._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

12._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

13._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

14._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

15._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

16._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

17._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

18._GU_147_/H RUQ_222

98.8 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._GU_147_/H RUQ_222

97.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._GU_147_/H RUQ_222

87.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._GU_147_/H GC-01-80-4-16

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

22._GU_147_/H RUQ_222

44.2 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240