SNP Profiles of GU 147 /H   View Data

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 Key

 1234567891011121314
_Input profile
AACCAAGGGGCTCCCCCCGGTTCCTTAA
1._GU_147_/H
AACCAA____CCCCGG_CC__
2._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
3._GU_147_/H
AACCAA____CCCCGG_CC__
4._GU_147_/H
AACCAA____CCCCGG_CC__
5._GU_147_/H
AACCAA____CCCCGG_CC__
6._GU_147_/H
AACCAA____CCCCGG_CC__
7._GU_147_/H
AACCAA____CCCCGG_CC__
8._GU_147_/H
AACCAA____CCCCGG_CC__
9._GU_147_/H
AACCAA____CCCCGG_CC__
10._GU_147_/H
AACCAA____CCCCGG_CC__
11._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
12._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
13._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
14._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
15._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
16._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
17._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
18._RUQ_222
AACCAA____CCCCGG_CC__
19._RUQ_222
_CCAA__CC_CC__TTCC__
20._GC-01-80-4-16
AA_AAGGGG_GGGG_GGAAGGAATT
21._RUQ_222
AA_CCGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGCTAATTGGATAACCGGAA
1._GU_147_/H
_GG__GG____ATAA_GGAA
2._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
3._GU_147_/H
_GG__GG____ATAA_GGAA
4._GU_147_/H
_GG__GG____ATAA_GGAA
5._GU_147_/H
_GG__GG____ATAA_GGAA
6._GU_147_/H
_GG__GG____ATAA_GGAA
7._GU_147_/H
_GG__GG____ATAA_GGAA
8._GU_147_/H
_GG__GG____ATAA_GGAA
9._GU_147_/H
_GG__GG____ATAA_GGAA
10._GU_147_/H
_GG__GG____ATAA_GGAA
11._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
12._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
13._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
14._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
15._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
16._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
17._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
18._RUQ_222
_GG__GG____ATAA_GGAA
19._RUQ_222
___CC____GG_AACCGG_
20._GC-01-80-4-16
CCGGCC_GGAGGGAAGGATAAGGCCAA
21._RUQ_222
CCGGCC_GGAAAGAAGGATAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GU_147_/H
___CC_GGTT__GG____
2._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GU_147_/H
___CC_GGTT__GG____
4._GU_147_/H
___CC_GGTT__GG____
5._GU_147_/H
___CC_GGTT__GG____
6._GU_147_/H
___CC_GGTT__GG____
7._GU_147_/H
___CC_GGTT__GG____
8._GU_147_/H
___CC_GGTT__GG____
9._GU_147_/H
___CC_GGTT__GG____
10._GU_147_/H
___CC_GGTT__GG____
11._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
12._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
13._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
14._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
15._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
16._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
17._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
18._RUQ_222
___CC_GGTT__GG____
19._RUQ_222
__GGCCCCGGTT__GGCC__GG
20._GC-01-80-4-16
AAAAGGCCCCGGAA_CCGGGGGGGGCC
21._RUQ_222
AAAAGGCCCCAGAACCACAGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GU_147_/H
_TT_________TTCC_
2._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GU_147_/H
_TT_________TTCC_
4._GU_147_/H
_TT_________TTCC_
5._GU_147_/H
_TT_________TTCC_
6._GU_147_/H
_TT_________TTCC_
7._GU_147_/H
_TT_________TTCC_
8._GU_147_/H
_TT_________TTCC_
9._GU_147_/H
_TT_________TTCC_
10._GU_147_/H
_TT_________TTCC_
11._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
12._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
13._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
14._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
15._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
16._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
17._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
18._RUQ_222
_TT_________TTCC_
19._RUQ_222
TT__GG______TTTT_TT
20._GC-01-80-4-16
_AA_GGAAGG_GGGGAAAAAAGGAA
21._RUQ_222
_AA_GGAAGG_GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGGGGGGGAACCCCGG
1._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
2._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
3._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
4._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
5._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
6._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
7._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
8._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
9._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
10._GU_147_/H
_CC_CCAAGG_GGGGGG___GG
11._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
12._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
13._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
14._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
15._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
16._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
17._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
18._RUQ_222
_CC_CCAAGG_GGGGGG___AA
19._RUQ_222
-CCCCCCAA_GGGGGGGGAA___
20._GC-01-80-4-16
GGGGGGGGAAGGGGGGCCCCAA___
21._RUQ_222
GGGGGGGGAAGGGGGGCCCCAA___
 7172737475767778798081828384
_Input profile
CCAAGGCCCCGGAACCCCTTAACTCCCC
1._GU_147_/H
CC_____AACC___CTCCCC
2._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
3._GU_147_/H
CC_____AACC___CTCCCC
4._GU_147_/H
CC_____AACC___CTCCCC
5._GU_147_/H
CC_____AACC___CTCCCC
6._GU_147_/H
CC_____AACC___CTCCCC
7._GU_147_/H
CC_____AACC___CTCCCC
8._GU_147_/H
CC_____AACC___CTCCCC
9._GU_147_/H
CC_____AACC___CTCCCC
10._GU_147_/H
CC_____AACC___CTCCCC
11._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
12._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
13._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
14._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
15._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
16._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
17._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
18._RUQ_222
CC_____AACC___CTCCCC
19._RUQ_222
______AACC__AACT__
20._GC-01-80-4-16
GGAAGGCCCC_AAGGGGTTAAAGGG_
21._RUQ_222
GGAAAACCCC_AACCGGTTAAGGAG_
 8586878889909192      
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
2._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
4._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
5._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
6._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
7._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
8._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
9._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
10._GU_147_/H
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
11._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
12._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
13._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
14._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
15._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
16._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
17._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
18._RUQ_222
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
19._RUQ_222
_GGCCCCTT___X_XX_XX_XX_XX_XX_X
20._GC-01-80-4-16
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X
21._RUQ_222
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_147_/H GC-01-080-4-16

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

2._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

4._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

5._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

6._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

7._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

8._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

9._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

10._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

13._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

15._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

16._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

17._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

18._GU_147_/H RUQ_222

97.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

19._GU_147_/H RUQ_222

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._GU_147_/H GC-01-80-4-16

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._GU_147_/H RUQ_222

44.2 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240