SNP Profiles of GU-154C   View Data

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 Key

 1234567891011121314
_Input profile
AACCACGGGGCTCCCCCCGGTTCCTTAA
1._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
2._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
3._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
4._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
5._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
6._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
7._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
8._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
9._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
10._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
11._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
12._GC-01-078-4-14
AACCACGGGGCTCC_CCGGTTCCTTAA
13._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
14._GU_154_/C
AACCAC____CCCCGG_CC__
15._GU_154_/C
AACCAC____CCCCGG_CC__
16._GU_154_/C
AACCAC____CCCCGG_CC__
17._GU_154_/C
AACCAC____CCCCGG_CC__
18._GU_154_/C
AACCAC____CCCCGG_CC__
19._GU_154_/C
AACCAC____CCCCGG_CC__
20._GU_154_/C
AACCAC____CCCCGG_CC__
21._GU_154_/C
AACCAC____CCCCGG_CC__
22._GU_154_/C
AACCAC____CCCCGG_CC__
23._GU_154_/C
AACCAC____CCCCGG_CC__
24._GU_154_/C
AACCAC____CCCCGG_CC__
25._GU_154_/C
AACCAC_____CCGG_CC__
26._GU_154_/C
AACCAC____CCCCGG_CC__
27._GU_154_/C
AACCAC____CCCCGG_CC__
28._GC-01-78-4-14
AA_ACGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGCTAATTGGATAACCGGAA
1._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
2._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
3._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
4._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
5._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
6._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
7._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
8._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
9._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
10._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
11._GC-01-078-4-14
CCGGGGCCGGCTAATTGGAT_CCGGAA
12._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
13._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
14._GU_154_/C
_GG__GG____ATAA_GGAA
15._GU_154_/C
_GG__GG____ATAA_GGAA
16._GU_154_/C
_GG__GG____ATAA_GGAA
17._GU_154_/C
_GG__GG____ATAA_GGAA
18._GU_154_/C
_GG__GG____ATAA_GGAA
19._GU_154_/C
_GG__GG____ATAA_GGAA
20._GU_154_/C
_GG__GG____ATAA_GGAA
21._GU_154_/C
_GG__GG____ATAA_GGAA
22._GU_154_/C
_GG__GG____ATAA_GGAA
23._GU_154_/C
_GG__GG____ATAA_GGAA
24._GU_154_/C
_GG__GG____ATAA_GGAA
25._GU_154_/C
_GG__GG____ATAA_GGAA
26._GU_154_/C
_GG__GG____ATAA_GGAA
27._GU_154_/C
_GG__GG____AT__GGAA
28._GC-01-78-4-14
CCGGCC_GGAGGGAAGGATAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
1._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
2._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
3._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
4._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
5._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
6._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
7._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
8._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
9._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
10._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
11._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCGGCCGG
12._GC-01-078-4-14
TTTTGGCC_AGTTGGGGGGCCGGCCGG
13._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCC_CCGG
14._GU_154_/C
___CC_AGTT__GG____
15._GU_154_/C
___CC_AGTT__GG____
16._GU_154_/C
___CC_AGTT__GG____
17._GU_154_/C
___CC_AGTT__GG____
18._GU_154_/C
___CC_AGTT__GG____
19._GU_154_/C
___CC_AGTT__GG____
20._GU_154_/C
___CC_AGTT__GG____
21._GU_154_/C
___CC_AGTT__GG____
22._GU_154_/C
___CC_AGTT__GG____
23._GU_154_/C
___CC_AGTT__GG____
24._GU_154_/C
___CC_AGTT__GG____
25._GU_154_/C
___CC_AGTT__GG____
26._GU_154_/C
___CC_AGTT__GG____
27._GU_154_/C
___CC_AGTT__GG____
28._GC-01-78-4-14
AAAAGGCCCCAGAACCCCGGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
10._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
11._GC-01-078-4-14
TTTTAAGGAACCCCGGGGTTTTTTCCTT
12._GC-01-078-4-14
TTTTAAGG_CCCCGGGGTTTTTTCCTT
13._GC-01-078-4-14
_TTAAGG_CCCCGGGGTTTTTTCCTT
14._GU_154_/C
_TT_________TTCC_
15._GU_154_/C
_TT_________TTCC_
16._GU_154_/C
_TT_________TTCC_
17._GU_154_/C
_TT_________TTCC_
18._GU_154_/C
_TT_________TTCC_
19._GU_154_/C
_TT_________TTCC_
20._GU_154_/C
_TT_________TTCC_
21._GU_154_/C
_TT_________TTCC_
22._GU_154_/C
_TT_________TTCC_
23._GU_154_/C
_TT_________TTCC_
24._GU_154_/C
_TT_________TTCC_
25._GU_154_/C
_TT_________TTCC_
26._GU_154_/C
_TT_________TTCC_
27._GU_154_/C
_TT_________TTCC_
28._GC-01-78-4-14
_AA_GGAAGG_GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
8._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
9._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
10._GC-01-078-4-14
GGCCCCCC_GGGGAAGGGGGGAACCCC
11._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
12._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
13._GC-01-078-4-14
GGCCCCCCAAGGGGAAGGGGGGAACCCC
14._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
15._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
16._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
17._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
18._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
19._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
20._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
21._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
22._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
23._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
24._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
25._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
26._GU_154_/C
_CC_CC_GG_AAGGGGGG___
27._GU_154_/C
_CC_CCAAGG_AAGGGGGG___
28._GC-01-78-4-14
GGGGGGGGAAGGGGAAGGCCCCAA__
 7172737475767778798081828384
_Input profile
GGCCACAACCCCAACGCCTTAACCCCCC
1._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
2._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
3._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
4._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
5._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
6._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
7._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
8._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
9._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
10._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
11._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
12._GC-01-078-4-14
GGCCACAACCCCAACGCCTTAACCCCCC
13._GC-01-078-4-14
_CCACAACCCCAACGCCTTAACCCCCC
14._GU_154_/C
GGCC____AACG___CCCCCC
15._GU_154_/C
GGCC____AACG___CCCCCC
16._GU_154_/C
GGCC____AACG___CCCCCC
17._GU_154_/C
GGCC____AACG___CCCCCC
18._GU_154_/C
GGCC____AACG___CCCCCC
19._GU_154_/C
GGCC____AACG___CCCCCC
20._GU_154_/C
GGCC____AACG___CCCCCC
21._GU_154_/C
GGCC____AACG___CCCCCC
22._GU_154_/C
GGCC____AACG___CCCCCC
23._GU_154_/C
GGCC____AACG___CCCCCC
24._GU_154_/C
_CC____AACG___CCCCCC
25._GU_154_/C
GGCC____AACG___CCCCCC
26._GU_154_/C
GGCC____AACG___CCCCCC
27._GU_154_/C
GGCC____AACG___CCCCCC
28._GC-01-78-4-14
_GGACAACCCCAACGGGTTAAGGGG_
 8586878889909192      
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
10._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
11._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
12._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
13._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
14._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
15._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
16._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
17._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
18._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
19._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
20._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
21._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
22._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
23._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
24._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
25._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
26._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
27._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
28._GC-01-78-4-14
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_154_/C GC-01-078-4-14

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

1._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

5._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_154_/C GC-01-078-4-14

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_154_/C GC-01-078-4-14

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._GU_154_/C GC-01-078-4-14

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._GU_154_/C GC-01-078-4-14

identical
88 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 15 > F
 Dapeng Zhang, 2016

15._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

16._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 3
 Dapeng Zhang, 2016

17._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 4
 Dapeng Zhang, 2016

18._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 9
 Dapeng Zhang, 2016

19._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 13
 Dapeng Zhang, 2016

20._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 14
 Dapeng Zhang, 2016

21._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 16
 Dapeng Zhang, 2016

22._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 10 > F
 Dapeng Zhang, 2016

23._GU_154_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 12 > F
 Dapeng Zhang, 2016

24._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 5
 Dapeng Zhang, 2016

25._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 7
 Dapeng Zhang, 2016

26._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 8
 Dapeng Zhang, 2016

27._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 1 > FP
 Dapeng Zhang, 2016

28._GU_154_/C GC-01-78-4-14

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240