SNP Profiles of GU-154C   View Data

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 Key

 1234567891011121314
_Input profile
AACCACGGGGCTCCCCGGTTCCTTAACC
1._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
2._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
3._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
4._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
5._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
6._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
7._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
8._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
9._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
10._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
11._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
12._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
13._GC-01-078-4-14
AACCACGGGGCTCCCCGGTTCCTTAACC
14._GU_154_/C
AACCAC____CCGG_CC___
15._GU_154_/C
AACCAC____CCGG_CC___
16._GU_154_/C
AACCAC____CCGG_CC___
17._GU_154_/C
AACCAC____CCGG_CC___
18._GU_154_/C
AACCAC____CCGG_CC___
19._GU_154_/C
AACCAC____CCGG_CC___
20._GU_154_/C
AACCAC____CCGG_CC___
21._GU_154_/C
AACCAC____CCGG_CC___
22._GU_154_/C
AACCAC____CCGG_CC___
23._GU_154_/C
AACCAC____CCGG_CC___
24._GU_154_/C
AACCAC____CCGG_CC___
25._GU_154_/C
AACCAC____CCGG_CC___
26._GU_154_/C
AACCAC____CCGG_CC___
27._GU_154_/C
AACCAC____CCGG_CC___
28._GC-01-78-4-14
AA_ACGGGG_GG_GGAAGGAATTCC
 1516171819202122232425262728
_Input profile
GGGGCCGGCTAATTGGATAACCGGAATT
1._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
2._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
3._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
4._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
5._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
6._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
7._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
8._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
9._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
10._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
11._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
12._GC-01-078-4-14
GGGGCCGGCTAATTGGAT_CCGGAATT
13._GC-01-078-4-14
GGGGCCGGCTAATTGGATAACCGGAATT
14._GU_154_/C
GG__GG____ATAA_GGAA_
15._GU_154_/C
GG__GG____ATAA_GGAA_
16._GU_154_/C
GG__GG____ATAA_GGAA_
17._GU_154_/C
GG__GG____ATAA_GGAA_
18._GU_154_/C
GG__GG____ATAA_GGAA_
19._GU_154_/C
GG__GG____ATAA_GGAA_
20._GU_154_/C
GG__GG____ATAA_GGAA_
21._GU_154_/C
GG__GG____ATAA_GGAA_
22._GU_154_/C
GG__GG____ATAA_GGAA_
23._GU_154_/C
GG__GG____ATAA_GGAA_
24._GU_154_/C
GG__GG____ATAA_GGAA_
25._GU_154_/C
GG__GG____ATAA_GGAA_
26._GU_154_/C
GG__GG____ATAA_GGAA_
27._GU_154_/C
GG__GG____AT__GGAA_
28._GC-01-78-4-14
GGCC_GGAGGGAAGGATAAGGCCAAAA
 2930313233343536373839404142
_Input profile
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
1._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
2._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
3._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
4._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
5._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
6._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
7._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
8._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
9._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
10._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
11._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
12._GC-01-078-4-14
TTGGCCAGTTGGGGGGCCGGCCGGTTTT
13._GC-01-078-4-14
TTGGCCAGTTGGGGGGCC_CCGG_TT
14._GU_154_/C
__CCAGTT__GG_____TT
15._GU_154_/C
__CCAGTT__GG_____TT
16._GU_154_/C
__CCAGTT__GG_____TT
17._GU_154_/C
__CCAGTT__GG_____TT
18._GU_154_/C
__CCAGTT__GG_____TT
19._GU_154_/C
__CCAGTT__GG_____TT
20._GU_154_/C
__CCAGTT__GG_____TT
21._GU_154_/C
__CCAGTT__GG_____TT
22._GU_154_/C
__CCAGTT__GG_____TT
23._GU_154_/C
__CCAGTT__GG_____TT
24._GU_154_/C
__CCAGTT__GG_____TT
25._GU_154_/C
__CCAGTT__GG_____TT
26._GU_154_/C
__CCAGTT__GG_____TT
27._GU_154_/C
__CCAGTT__GG_____TT
28._GC-01-78-4-14
AAGGCCAGAACCCCGGGGGGGGCC_AA
 4344454647484950515253545556
_Input profile
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
1._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
2._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
3._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
4._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
5._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
6._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
7._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
8._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
9._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
10._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
11._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
12._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
13._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
14._GU_154_/C
________TTCC__CC_
15._GU_154_/C
________TTCC__CC_
16._GU_154_/C
________TTCC__CC_
17._GU_154_/C
________TTCC__CC_
18._GU_154_/C
________TTCC__CC_
19._GU_154_/C
________TTCC__CC_
20._GU_154_/C
________TTCC__CC_
21._GU_154_/C
________TTCC__CC_
22._GU_154_/C
________TTCC__CC_
23._GU_154_/C
________TTCC__CC_
24._GU_154_/C
________TTCC__CC_
25._GU_154_/C
________TTCC__CC_
26._GU_154_/C
________TTCC__CC_
27._GU_154_/C
________TTCC__CC_
28._GC-01-78-4-14
_GGGG_GGGGAAAAAAGGAAGGGGGG
 5758596061626364656667686970
_Input profile
CCAAGGGGAAGGGGGGAACCCCGGCCAC
1._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
2._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
3._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
4._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
5._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
6._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
7._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
8._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
9._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
10._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
11._GC-01-078-4-14
CC_GGGGAAGGGGGGAACCCCGGCCAC
12._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCGGCCAC
13._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCC_CCAC
14._GU_154_/C
CCAAGG_AAGGGGGG___GGCC_
15._GU_154_/C
CCAAGG_AAGGGGGG___GGCC_
16._GU_154_/C
CCAAGG_AAGGGGGG___GGCC_
17._GU_154_/C
CCAAGG_AAGGGGGG___GGCC_
18._GU_154_/C
CCAAGG_AAGGGGGG___GGCC_
19._GU_154_/C
CCAAGG_AAGGGGGG___GGCC_
20._GU_154_/C
CCAAGG_AAGGGGGG___GGCC_
21._GU_154_/C
CCAAGG_AAGGGGGG___GGCC_
22._GU_154_/C
CCAAGG_AAGGGGGG___GGCC_
23._GU_154_/C
CCAAGG_AAGGGGGG___GGCC_
24._GU_154_/C
CCAAGG_AAGGGGGG___GGCC_
25._GU_154_/C
CCAAGG_AAGGGGGG____CC_
26._GU_154_/C
CC_GG_AAGGGGGG___GGCC_
27._GU_154_/C
CCAAGG_AAGGGGGG___GGCC_
28._GC-01-78-4-14
GGAAGGGGAAGGCCCCAA___GGAC
 7172737475767778798081828384
_Input profile
AACCCCGGAACGCCTTAACCCCCCCCGG
1._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
2._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
3._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
4._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
5._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
6._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
7._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
8._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
9._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
10._GC-01-078-4-14
AACCCC_AACGCCTTAACCCCCCCCGG
11._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
12._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
13._GC-01-078-4-14
AACCCCGGAACGCCTTAACCCCCCCCGG
14._GU_154_/C
____AACG___CCCCCC_GG
15._GU_154_/C
____AACG___CCCCCC_GG
16._GU_154_/C
____AACG___CCCCCC_GG
17._GU_154_/C
____AACG___CCCCCC_GG
18._GU_154_/C
____AACG___CCCCCC_GG
19._GU_154_/C
____AACG___CCCCCC_GG
20._GU_154_/C
____AACG___CCCCCC_GG
21._GU_154_/C
____AACG___CCCCCC_GG
22._GU_154_/C
____AACG___CCCCCC_GG
23._GU_154_/C
____AACG___CCCCCC_GG
24._GU_154_/C
____AACG___CCCCCC_GG
25._GU_154_/C
____AACG___CCCCCC_GG
26._GU_154_/C
____AACG___CCCCCC_GG
27._GU_154_/C
____AACG___CCCCCC_GG
28._GC-01-78-4-14
AACCCC_AACGGGTTAAGGGG_GG_
 858687888990        
_Input profile
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-01-078-4-14
CCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
15._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
16._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
17._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
18._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
19._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
20._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
21._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
22._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
23._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
24._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
25._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
26._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
27._GU_154_/C
_CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_X
28._GC-01-78-4-14
_GGAAAATTGGX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_154_/C GC-01-078-4-14

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

5._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_154_/C GC-01-078-4-14

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

11._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._GU_154_/C GC-01-078-4-14

identical
89 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._GU_154_/C GC-01-078-4-14

identical
87 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 15 > F
 Dapeng Zhang, 2016

15._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

16._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 3
 Dapeng Zhang, 2016

17._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 4
 Dapeng Zhang, 2016

18._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 7
 Dapeng Zhang, 2016

19._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 9
 Dapeng Zhang, 2016

20._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 13
 Dapeng Zhang, 2016

21._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 14
 Dapeng Zhang, 2016

22._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 16
 Dapeng Zhang, 2016

23._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 10 > F
 Dapeng Zhang, 2016

24._GU_154_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 12 > F
 Dapeng Zhang, 2016

25._GU_154_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 5
 Dapeng Zhang, 2016

26._GU_154_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 8
 Dapeng Zhang, 2016

27._GU_154_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1414 1 > FP
 Dapeng Zhang, 2016

28._GU_154_/C GC-01-78-4-14

47.4 %
76 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1165 9TcSNP429 10TcSNP75
11TcSNP891 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP1062
16TcSNP836 17TcSNP878 18TcSNP929 19TcSNP413 20TcSNP653
21TcSNP1149 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP998 33TcSNP150 34TcSNP28 35TcSNP751
36TcSNP1484 37TcSNP602 38TcSNP561 39TcSNP894 40TcSNP1063
41TcSNP1126 42TcSNP1270 43TcSNP606 44TcSNP329 45TcSNP944
46TcSNP1242 47TcSNP1383 48TcSNP547 49TcSNP776 50TcSNP1309
51TcSNP151 52TcSNP1520 53TcSNP799 54TcSNP899 55TcSNP226
56TcSNP1439 57TcSNP1442 58TcSNP193 59TcSNP25 60TcSNP364
61TcSNP144 62TcSNP230 63TcSNP560 64TcSNP723 65TcSNP731
66TcSNP701 67TcSNP1041 68TcSNP645 69TcSNP917 70Tcm003s01336581
71Tcm003s07402719 72Tcm001s00947643 73Tcm006s26664133 74Tcm002s20575712 75TcSNP529
76TcSNP1458 77TcSNP60 78TcSNP430 79TcSNP823 80TcSNP619
81TcSNP994 82TcSNP1144 83TcSNP1156 84TcSNP469 85TcSNP999
86TcSNP242 87TcSNP1253 88TcSNP1414 89TcSNP154 90TcSNP240