SNP Profiles of GU-154C   View Data

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 Key

 1234567891011121314
_Input profile
AACCACGGGGCTCCCCCCGGTTCCTTAA
1._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
2._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
3._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
4._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
5._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
6._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
7._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
8._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
9._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
10._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
11._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
12._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
13._GC-01-078-4-14
AACCACGGGGCTCC_CCGGTTCCTTAA
14._GU_154_/C
AACCAC____CCCCGG_CC__
15._GU_154_/C
AACCAC____CCCCGG_CC__
16._GU_154_/C
AACCAC____CCCCGG_CC__
17._GU_154_/C
AACCAC____CCCCGG_CC__
18._GU_154_/C
AACCAC____CCCCGG_CC__
19._GU_154_/C
AACCAC____CCCCGG_CC__
20._GU_154_/C
AACCAC____CCCCGG_CC__
21._GU_154_/C
AACCAC____CCCCGG_CC__
22._GU_154_/C
AACCAC____CCCCGG_CC__
23._GU_154_/C
AACCAC____CCCCGG_CC__
24._GU_154_/C
AACCAC____CCCCGG_CC__
25._GU_154_/C
AACCAC_____CCGG_CC__
26._GU_154_/C
AACCAC____CCCCGG_CC__
27._GU_154_/C
AACCAC____CCCCGG_CC__
28._GC-01-78-4-14
AA_ACGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGCTAATTGGATAACCGGAA
1._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
2._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
3._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
4._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
5._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
6._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
7._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
8._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
9._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
10._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
11._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
12._GC-01-078-4-14
CCGGGGCCGGCTAATTGGAT_CCGGAA
13._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATAACCGGAA
14._GU_154_/C
_GG__GG____ATAA_GGAA
15._GU_154_/C
_GG__GG____ATAA_GGAA
16._GU_154_/C
_GG__GG____ATAA_GGAA
17._GU_154_/C
_GG__GG____ATAA_GGAA
18._GU_154_/C
_GG__GG____ATAA_GGAA
19._GU_154_/C
_GG__GG____ATAA_GGAA
20._GU_154_/C
_GG__GG____ATAA_GGAA
21._GU_154_/C
_GG__GG____ATAA_GGAA
22._GU_154_/C
_GG__GG____ATAA_GGAA
23._GU_154_/C
_GG__GG____ATAA_GGAA
24._GU_154_/C
_GG__GG____ATAA_GGAA
25._GU_154_/C
_GG__GG____ATAA_GGAA
26._GU_154_/C
_GG__GG____ATAA_GGAA
27._GU_154_/C
_GG__GG____AT__GGAA
28._GC-01-78-4-14
CCGGCC_GGAGGGAAGGATAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
1._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
2._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
3._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
4._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
5._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
6._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
7._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
8._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
9._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
10._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
11._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
12._GC-01-078-4-14
TTTTGGCCCCAGTTGGGGGGCCCCGGTT
13._GC-01-078-4-14
TTTTGGCC_AGTTGGGGGGCCCCGGTT
14._GU_154_/C
___CC_AGTT__GG___TT
15._GU_154_/C
___CC_AGTT__GG___TT
16._GU_154_/C
___CC_AGTT__GG___TT
17._GU_154_/C
___CC_AGTT__GG___TT
18._GU_154_/C
___CC_AGTT__GG___TT
19._GU_154_/C
___CC_AGTT__GG___TT
20._GU_154_/C
___CC_AGTT__GG___TT
21._GU_154_/C
___CC_AGTT__GG___TT
22._GU_154_/C
___CC_AGTT__GG___TT
23._GU_154_/C
___CC_AGTT__GG___TT
24._GU_154_/C
___CC_AGTT__GG___TT
25._GU_154_/C
___CC_AGTT__GG___TT
26._GU_154_/C
___CC_AGTT__GG___TT
27._GU_154_/C
___CC_AGTT__GG___TT
28._GC-01-78-4-14
AAAAGGCCCCAGAACCCCGGGGGGCCAA
 4344454647484950515253545556
_Input profile
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
1._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
2._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
3._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
4._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
5._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
6._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
7._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
8._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
9._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
10._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
11._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
12._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
13._GC-01-078-4-14
AAGGCCCCGGGGTTTTTTCCTTGGCCCC
14._GU_154_/C
________TTCC__CC_
15._GU_154_/C
________TTCC__CC_
16._GU_154_/C
________TTCC__CC_
17._GU_154_/C
________TTCC__CC_
18._GU_154_/C
________TTCC__CC_
19._GU_154_/C
________TTCC__CC_
20._GU_154_/C
________TTCC__CC_
21._GU_154_/C
________TTCC__CC_
22._GU_154_/C
________TTCC__CC_
23._GU_154_/C
________TTCC__CC_
24._GU_154_/C
________TTCC__CC_
25._GU_154_/C
________TTCC__CC_
26._GU_154_/C
________TTCC__CC_
27._GU_154_/C
________TTCC__CC_
28._GC-01-78-4-14
_GGGG_GGGGAAAAAAGGAAGGGGGG
 5758596061626364656667686970
_Input profile
CCAAGGGGAAGGGGGGAACCCCCCACAA
1._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
2._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
3._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
4._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
5._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
6._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
7._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
8._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
9._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
10._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
11._GC-01-078-4-14
CC_GGGGAAGGGGGGAACCCCCCACAA
12._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
13._GC-01-078-4-14
CCAAGGGGAAGGGGGGAACCCCCCACAA
14._GU_154_/C
CCAAGG_AAGGGGGG___CC__
15._GU_154_/C
CCAAGG_AAGGGGGG___CC__
16._GU_154_/C
CCAAGG_AAGGGGGG___CC__
17._GU_154_/C
CCAAGG_AAGGGGGG___CC__
18._GU_154_/C
CCAAGG_AAGGGGGG___CC__
19._GU_154_/C
CCAAGG_AAGGGGGG___CC__
20._GU_154_/C
CCAAGG_AAGGGGGG___CC__
21._GU_154_/C
CCAAGG_AAGGGGGG___CC__
22._GU_154_/C
CCAAGG_AAGGGGGG___CC__
23._GU_154_/C
CCAAGG_AAGGGGGG___CC__
24._GU_154_/C
CCAAGG_AAGGGGGG___CC__
25._GU_154_/C
CCAAGG_AAGGGGGG___CC__
26._GU_154_/C
CC_GG_AAGGGGGG___CC__
27._GU_154_/C
CCAAGG_AAGGGGGG___CC__
28._GC-01-78-4-14
GGAAGGGGAAGGCCCCAA__GGACAA
 7172737475767778798081828384
_Input profile
CCCCGGAACGCCTTAACCCCCCCCGGCC
1._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
2._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
3._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
4._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
5._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
6._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
7._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
8._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
9._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
10._GC-01-078-4-14
CCCC_AACGCCTTAACCCCCCCCGGCC
11._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
12._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
13._GC-01-078-4-14
CCCCGGAACGCCTTAACCCCCCCCGGCC
14._GU_154_/C
___AACG___CCCCCC_GG_
15._GU_154_/C
___AACG___CCCCCC_GG_
16._GU_154_/C
___AACG___CCCCCC_GG_
17._GU_154_/C
___AACG___CCCCCC_GG_
18._GU_154_/C
___AACG___CCCCCC_GG_
19._GU_154_/C
___AACG___CCCCCC_GG_
20._GU_154_/C
___AACG___CCCCCC_GG_
21._GU_154_/C
___AACG___CCCCCC_GG_
22._GU_154_/C
___AACG___CCCCCC_GG_
23._GU_154_/C
___AACG___CCCCCC_GG_
24._GU_154_/C
___AACG___CCCCCC_GG_
25._GU_154_/C
___AACG___CCCCCC_GG_
26._GU_154_/C
___AACG___CCCCCC_GG_
27._GU_154_/C
___AACG___CCCCCC_GG_
28._GC-01-78-4-14
CCCC_AACGGGTTAAGGGG_GG__
 8586878889         
_Input profile
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-01-078-4-14
CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GU_154_/C
CCTTTT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-01-78-4-14
GGAAAATTGGX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_154_/C GC-01-078-4-14

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._GU_154_/C GC-01-078-4-14

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_154_/C GC-01-078-4-14

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._GU_154_/C GC-01-078-4-14

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._GU_154_/C GC-01-078-4-14

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

5._GU_154_/C GC-01-078-4-14

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._GU_154_/C GC-01-078-4-14

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._GU_154_/C GC-01-078-4-14

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._GU_154_/C GC-01-078-4-14

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_154_/C GC-01-078-4-14

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_154_/C GC-01-078-4-14

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

11._GU_154_/C GC-01-078-4-14

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._GU_154_/C GC-01-078-4-14

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

13._GU_154_/C GC-01-078-4-14

identical
87 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 15 > F
 Dapeng Zhang, 2016

15._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 3
 Dapeng Zhang, 2016

17._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 4
 Dapeng Zhang, 2016

18._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 5
 Dapeng Zhang, 2016

19._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 9
 Dapeng Zhang, 2016

20._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 13
 Dapeng Zhang, 2016

21._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 14
 Dapeng Zhang, 2016

22._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 16
 Dapeng Zhang, 2016

23._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 10 > F
 Dapeng Zhang, 2016

24._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 12 > F
 Dapeng Zhang, 2016

25._GU_154_/C

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 7
 Dapeng Zhang, 2016

26._GU_154_/C

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 8
 Dapeng Zhang, 2016

27._GU_154_/C

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 1 > FP
 Dapeng Zhang, 2016

28._GU_154_/C GC-01-78-4-14

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP894
41TcSNP1063 42TcSNP1270 43TcSNP606 44TcSNP329 45TcSNP944
46TcSNP1242 47TcSNP1383 48TcSNP547 49TcSNP776 50TcSNP1309
51TcSNP151 52TcSNP1520 53TcSNP799 54TcSNP899 55TcSNP226
56TcSNP1439 57TcSNP1442 58TcSNP193 59TcSNP25 60TcSNP364
61TcSNP144 62TcSNP230 63TcSNP560 64TcSNP723 65TcSNP731
66TcSNP701 67TcSNP1041 68TcSNP917 69Tcm003s01336581 70Tcm003s07402719
71Tcm001s00947643 72Tcm006s26664133 73Tcm002s20575712 74TcSNP529 75TcSNP1458
76TcSNP60 77TcSNP430 78TcSNP823 79TcSNP619 80TcSNP994
81TcSNP1144 82TcSNP1156 83TcSNP469 84TcSNP999 85TcSNP242
86TcSNP1253 87TcSNP1414 88TcSNP154 89TcSNP240