SNP Profiles of GU-154C   View Data

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 Key

 1234567891011121314
_Input profile
AACCACGGGGCTCCCCCCGGTTCCTTAA
1._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
2._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
3._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
4._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
5._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
6._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
7._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
8._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
9._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
10._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
11._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
12._GC-01-078-4-14
AACCACGGGGCTCC_CCGGTTCCTTAA
13._GC-01-078-4-14
AACCACGGGGCTCCCCCCGGTTCCTTAA
14._GU_154_/C
AACCAC____CCCCGG_CC__
15._GU_154_/C
AACCAC____CCCCGG_CC__
16._GU_154_/C
AACCAC____CCCCGG_CC__
17._GU_154_/C
AACCAC____CCCCGG_CC__
18._GU_154_/C
AACCAC____CCCCGG_CC__
19._GU_154_/C
AACCAC____CCCCGG_CC__
20._GU_154_/C
AACCAC____CCCCGG_CC__
21._GU_154_/C
AACCAC____CCCCGG_CC__
22._GU_154_/C
AACCAC____CCCCGG_CC__
23._GU_154_/C
AACCAC____CCCCGG_CC__
24._GU_154_/C
AACCAC____CCCCGG_CC__
25._GU_154_/C
AACCAC____CCCCGG_CC__
26._GU_154_/C
AACCAC_____CCGG_CC__
27._GU_154_/C
AACCAC____CCCCGG_CC__
28._GC-01-78-4-14
AA_ACGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGCTAATTGGATCCGGAATT
1._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
2._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
3._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
4._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
5._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
6._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
7._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
8._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
9._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
10._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
11._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
12._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
13._GC-01-078-4-14
CCGGGGCCGGCTAATTGGATCCGGAATT
14._GU_154_/C
_GG__GG____AT_GGAA_
15._GU_154_/C
_GG__GG____AT_GGAA_
16._GU_154_/C
_GG__GG____AT_GGAA_
17._GU_154_/C
_GG__GG____AT_GGAA_
18._GU_154_/C
_GG__GG____AT_GGAA_
19._GU_154_/C
_GG__GG____AT_GGAA_
20._GU_154_/C
_GG__GG____AT_GGAA_
21._GU_154_/C
_GG__GG____AT_GGAA_
22._GU_154_/C
_GG__GG____AT_GGAA_
23._GU_154_/C
_GG__GG____AT_GGAA_
24._GU_154_/C
_GG__GG____AT_GGAA_
25._GU_154_/C
_GG__GG____AT_GGAA_
26._GU_154_/C
_GG__GG____AT_GGAA_
27._GU_154_/C
_GG__GG____AT_GGAA_
28._GC-01-78-4-14
CCGGCC_GGAGGGAAGGATGGCCAAAA
 2930313233343536373839404142
_Input profile
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
1._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
2._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
3._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
4._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
5._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
6._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
7._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
8._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
9._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
10._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
11._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCCGGCCGGTT
12._GC-01-078-4-14
TTGGCC_AGTTGGGGGGCCGGCCGGTT
13._GC-01-078-4-14
TTGGCCCCAGTTGGGGGGCC_CCGG_
14._GU_154_/C
__CC_AGTT__GG_____
15._GU_154_/C
__CC_AGTT__GG_____
16._GU_154_/C
__CC_AGTT__GG_____
17._GU_154_/C
__CC_AGTT__GG_____
18._GU_154_/C
__CC_AGTT__GG_____
19._GU_154_/C
__CC_AGTT__GG_____
20._GU_154_/C
__CC_AGTT__GG_____
21._GU_154_/C
__CC_AGTT__GG_____
22._GU_154_/C
__CC_AGTT__GG_____
23._GU_154_/C
__CC_AGTT__GG_____
24._GU_154_/C
__CC_AGTT__GG_____
25._GU_154_/C
__CC_AGTT__GG_____
26._GU_154_/C
__CC_AGTT__GG_____
27._GU_154_/C
__CC_AGTT__GG_____
28._GC-01-78-4-14
AAGGCCCCAGAACCCCGGGGGGGGCC_
 4344454647484950515253545556
_Input profile
TTAAGGAACCCCGGGGTTTTTTCCTTGG
1._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
2._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
3._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
4._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
5._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
6._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
7._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
8._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
9._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
10._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
11._GC-01-078-4-14
TTAAGGAACCCCGGGGTTTTTTCCTTGG
12._GC-01-078-4-14
TTAAGG_CCCCGGGGTTTTTTCCTTGG
13._GC-01-078-4-14
TTAAGG_CCCCGGGGTTTTTTCCTTGG
14._GU_154_/C
TT_________TTCC__
15._GU_154_/C
TT_________TTCC__
16._GU_154_/C
TT_________TTCC__
17._GU_154_/C
TT_________TTCC__
18._GU_154_/C
TT_________TTCC__
19._GU_154_/C
TT_________TTCC__
20._GU_154_/C
TT_________TTCC__
21._GU_154_/C
TT_________TTCC__
22._GU_154_/C
TT_________TTCC__
23._GU_154_/C
TT_________TTCC__
24._GU_154_/C
TT_________TTCC__
25._GU_154_/C
TT_________TTCC__
26._GU_154_/C
TT_________TTCC__
27._GU_154_/C
TT_________TTCC__
28._GC-01-78-4-14
AA_GGAAGG_GGGGAAAAAAGGAAGG
 5758596061626364656667686970
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCGG
1._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
2._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
3._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
4._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
5._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
6._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
7._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
8._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
9._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
10._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
11._GC-01-078-4-14
CCCCCC_GGGGAAGGGGGGAACCCCGG
12._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCCGG
13._GC-01-078-4-14
CCCCCCAAGGGGAAGGGGGGAACCCC_
14._GU_154_/C
CC_CCAAGG_AAGGGGGG___GG
15._GU_154_/C
CC_CCAAGG_AAGGGGGG___GG
16._GU_154_/C
CC_CCAAGG_AAGGGGGG___GG
17._GU_154_/C
CC_CCAAGG_AAGGGGGG___GG
18._GU_154_/C
CC_CCAAGG_AAGGGGGG___GG
19._GU_154_/C
CC_CCAAGG_AAGGGGGG___GG
20._GU_154_/C
CC_CCAAGG_AAGGGGGG___GG
21._GU_154_/C
CC_CCAAGG_AAGGGGGG___GG
22._GU_154_/C
CC_CCAAGG_AAGGGGGG___GG
23._GU_154_/C
CC_CCAAGG_AAGGGGGG___GG
24._GU_154_/C
CC_CCAAGG_AAGGGGGG___GG
25._GU_154_/C
CC_CCAAGG_AAGGGGGG____
26._GU_154_/C
CC_CCAAGG_AAGGGGGG___GG
27._GU_154_/C
CC_CC_GG_AAGGGGGG___GG
28._GC-01-78-4-14
GGGGGGAAGGGGAAGGCCCCAA___
 7172737475767778798081828384
_Input profile
CCACAACCCCGGAACGCCTTAACCCCCC
1._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
2._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
3._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
4._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
5._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
6._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
7._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
8._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
9._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
10._GC-01-078-4-14
CCACAACCCC_AACGCCTTAACCCCCC
11._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
12._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
13._GC-01-078-4-14
CCACAACCCCGGAACGCCTTAACCCCCC
14._GU_154_/C
CC_____AACG___CCCCCC
15._GU_154_/C
CC_____AACG___CCCCCC
16._GU_154_/C
CC_____AACG___CCCCCC
17._GU_154_/C
CC_____AACG___CCCCCC
18._GU_154_/C
CC_____AACG___CCCCCC
19._GU_154_/C
CC_____AACG___CCCCCC
20._GU_154_/C
CC_____AACG___CCCCCC
21._GU_154_/C
CC_____AACG___CCCCCC
22._GU_154_/C
CC_____AACG___CCCCCC
23._GU_154_/C
CC_____AACG___CCCCCC
24._GU_154_/C
CC_____AACG___CCCCCC
25._GU_154_/C
CC_____AACG___CCCCCC
26._GU_154_/C
CC_____AACG___CCCCCC
27._GU_154_/C
CC_____AACG___CCCCCC
28._GC-01-78-4-14
GGACAACCCC_AACGGGTTAAGGGG_
 8586878889909192      
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
10._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
11._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
12._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
13._GC-01-078-4-14
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
14._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
15._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
16._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
17._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
18._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
19._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
20._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
21._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
22._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
23._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
24._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
25._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
26._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
27._GU_154_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
28._GC-01-78-4-14
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_154_/C GC-01-078-4-14

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._GU_154_/C GC-01-078-4-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_154_/C GC-01-078-4-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

3._GU_154_/C GC-01-078-4-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._GU_154_/C GC-01-078-4-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

5._GU_154_/C GC-01-078-4-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._GU_154_/C GC-01-078-4-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._GU_154_/C GC-01-078-4-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._GU_154_/C GC-01-078-4-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_154_/C GC-01-078-4-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_154_/C GC-01-078-4-14

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

11._GU_154_/C GC-01-078-4-14

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._GU_154_/C GC-01-078-4-14

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._GU_154_/C GC-01-078-4-14

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 15 > F
 Dapeng Zhang, 2016

15._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 3
 Dapeng Zhang, 2016

17._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 4
 Dapeng Zhang, 2016

18._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 9
 Dapeng Zhang, 2016

19._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 13
 Dapeng Zhang, 2016

20._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 14
 Dapeng Zhang, 2016

21._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 16
 Dapeng Zhang, 2016

22._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 1 > FP
 Dapeng Zhang, 2016

23._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 10 > F
 Dapeng Zhang, 2016

24._GU_154_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 12 > F
 Dapeng Zhang, 2016

25._GU_154_/C

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 5
 Dapeng Zhang, 2016

26._GU_154_/C

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 7
 Dapeng Zhang, 2016

27._GU_154_/C

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1414 8
 Dapeng Zhang, 2016

28._GU_154_/C GC-01-78-4-14

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240