SNP Profiles of UF 29   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
ATAACTACAGAGCTCTCCCCTTCTTTAT
1._UF_29
ATAACTAC____CCCC_CT__
2._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
3._UF_29
ATAACTAC____CCCC_CT__
4._UF_29
ATAACTAC____CCCC_CT__
5._UF_29
ATAACTAC____CCCC_CT__
6._UF_29
ATAACTAC____CCCC_CT__
7._UF_29
ATAACTAC____CCCC_CT__
8._UF_29
ATAACTAC____CCCC_CT__
9._UF_29
ATAACTAC____CCCC_CT__
10._UF_29
ATAACTAC____CCCC_CT__
11._UF_29
ATAACTAC____CCCC_CT__
12._UF_29
ATAACTAC____CCCC_CT__
13._UF_29
ATAACTAC____CCCC_CT__
14._UF_29
ATAACTAC____CCCC_CT__
15._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
16._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
17._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
18._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
19._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
20._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
21._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
22._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
23._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
24._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
25._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
26._UF_29
ATACCTAC_____CC_CT__
27._UF_29
ATACCTAC____CCCC_CT__
28._UF_29
ATACCTAC____CCCC_CT__
29._UF_29_Fld#_20_Plt#_5
AT__ACAGAG_AGGG_AAAGAAAT
 1516171819202122232425262728
_Input profile
ACAAAGCGCGGGCTAACTGGATATCCGG
1._UF_29
__AG__GG____ATAT_GG
2._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
3._UF_29
__AG__GG____ATAT_GG
4._UF_29
__AG__GG____ATAT_GG
5._UF_29
__AG__GG____ATAT_GG
6._UF_29
__AG__GG____ATAT_GG
7._UF_29
__AG__GG____ATAT_GG
8._UF_29
__AG__GG____ATAT_GG
9._UF_29
__AG__GG____ATAT_GG
10._UF_29
__AG__GG____ATAT_GG
11._UF_29
__AG__GG____ATAT_GG
12._UF_29
__AG__GG____ATAT_GG
13._UF_29
__AG__GG____ATAT_GG
14._UF_29
__AG__GG____ATAT_GG
15._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
16._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
17._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
18._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
19._GC-01-020-1-20
ACAAAGCGCGGG_AACTGGATATCCGG
20._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
21._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
22._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
23._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
24._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
25._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
26._UF_29
__AG__GG____ATAT_GG
27._UF_29
__AG__GG____ATAT_GG
28._UF_29
__AG__GG____ATAT_GG
29._UF_29_Fld#_20_Plt#_5
ACAGAGCG_GGAGAGAGGGATATGGCC
 2930313233343536373839404142
_Input profile
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
1._UF_29
AT___CG_AGGT__AG___
2._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
3._UF_29
AT___CG_AGGT__AG___
4._UF_29
AT___CG_AGGT__AG___
5._UF_29
AT___CG_AGGT__AG___
6._UF_29
AT___CG_AGGT__AG___
7._UF_29
AT___CG_AGGT__AG___
8._UF_29
AT___CG_AGGT__AG___
9._UF_29
AT___CG_AGGT__AG___
10._UF_29
AT___CG_AGGT__AG___
11._UF_29
AT___CG_AGGT__AG___
12._UF_29
AT___CG_AGGT__AG___
13._UF_29
AT___CG_AGGT__AG___
14._UF_29
AT___CG_AGGT__AG___
15._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
16._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
17._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
18._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
19._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
20._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
21._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
22._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
23._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
24._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
25._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
26._UF_29
____CG__GT__AG___
27._UF_29
AT___CG_AGGT__AG___
28._UF_29
AT___CG_AGGT__AG___
29._UF_29_Fld#_20_Plt#_5
ATAAACAGCGCCAGACCCAAAGGGAGCG
 4344454647484950515253545556
_Input profile
GGTTCTAAGGAACCACGGAGTTTTCTCT
1._UF_29
__CT_________CTCT
2._GC-01-020-1-20
GGTTCTAAGGAACC_GGAGTTTTCTCT
3._UF_29
____________CTCT
4._UF_29
__CT_________CTCT
5._UF_29
__CT_________CTCT
6._UF_29
__CT_________CTCT
7._UF_29
__CT_________CTCT
8._UF_29
__CT_________CTCT
9._UF_29
__CT_________CTCT
10._UF_29
__CT_________CTCT
11._UF_29
__CT_________CTCT
12._UF_29
__CT_________CTCT
13._UF_29
__CT_________CTCT
14._UF_29
__CT_________CTCT
15._GC-01-020-1-20
GGTT_AAGGAACCACGGAGTTTTCTCT
16._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
17._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
18._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
19._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
20._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
21._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
22._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
23._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
24._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
25._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
26._UF_29
__CT_________CT_
27._UF_29
__CT_________CTCT
28._UF_29
__CT_________CTCT
29._UF_29_Fld#_20_Plt#_5
CC_AG_GGAAGG_GGAGAAAAAGAG
 5758596061626364656667686970
_Input profile
TTAGCCCTCTACCGAGCCAAGTGGAGTT
1._UF_29
__CC_CTACCG_CCAAGTGG__
2._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
3._UF_29
__CC_CTACCG_CCAAGTGG__
4._UF_29
__CC_CTACCG_CCAAGTGG__
5._UF_29
__CC_CTACCG_CCAAGTGG__
6._UF_29
__CC_CTACCG_CCAAGTGG__
7._UF_29
__CC_CTACCG_CCAAGTGG__
8._UF_29
__CC_CTACCG_CCAAGTGG__
9._UF_29
__CC_CTACCG_CCAAGTGG__
10._UF_29
__CC_CTACCG_CCAAGTGG__
11._UF_29
__CC_CTACCG_CCAAGTGG__
12._UF_29
__CC_CTACCG_CCAAGTGG__
13._UF_29
__CC_CTACCG_CCAAGTGG__
14._UF_29
__CC_CTACCG_CCAAGTGG__
15._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
16._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
17._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
18._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
19._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
20._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
21._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
22._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
23._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
24._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
25._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
26._UF_29
____CTACCG_CCAA_GG__
27._UF_29
__CC_CTACCG_CCAAGTGG__
28._UF_29
____CTACCG_CCAAGTGG__
29._UF_29_Fld#_20_Plt#_5
AAAGGGAGAGACCGAGCCAAACCCAG_
 7172737475767778798081828384
_Input profile
CCAGCTACAGACACAAACCGCCATACCT
1._UF_29
_AGCT_____ACCG___CT
2._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
3._UF_29
_AGCT_____ACCG___CT
4._UF_29
_AGCT_____ACCG___CT
5._UF_29
_AGCT_____ACCG___CT
6._UF_29
_AGCT_____ACCG___CT
7._UF_29
_AGCT_____ACCG___CT
8._UF_29
_AGCT_____ACCG___CT
9._UF_29
_AGCT_____ACCG___CT
10._UF_29
_AGCT_____ACCG___CT
11._UF_29
_AGCT_____ACCG___CT
12._UF_29
_AGCT_____ACCG___CT
13._UF_29
_AGCT_____ACCG___CT
14._UF_29
_AGCT_____ACCG___CT
15._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
16._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
17._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
18._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
19._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
20._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
21._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
22._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
23._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
24._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
25._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
26._UF_29
_AACT_____ACCG___CT
27._UF_29
_AACT_____ACCG___CT
28._UF_29
_AACT_____ACCG___CT
29._UF_29_Fld#_20_Plt#_5
__AGACAGACAC_ACCGGGATACAG
 85868788899091929394    
_Input profile
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
1._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
2._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
3._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
4._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
5._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
6._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
7._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
8._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
9._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
10._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
11._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
12._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
13._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
14._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
15._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
16._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
17._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
18._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
19._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
20._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
21._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
22._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
23._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
24._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
25._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
26._UF_29
TT____CCGTCT__X_XX_XX_XX_X
27._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
28._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
29._UF_29_Fld#_20_Plt#_5
AA_AA__GGACAGATGGX_XX_XX_XX_X

Input profile: UF_29 GC-01-020-1-20

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

1._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

2._UF_29 GC-01-020-1-20

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._UF_29

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

4._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

5._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

6._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

7._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

8._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

9._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

10._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

11._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

12._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

13._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

14._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

15._UF_29 GC-01-020-1-20

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._UF_29 GC-01-020-1-20

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._UF_29 GC-01-020-1-20

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

18._UF_29 GC-01-020-1-20

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

19._UF_29 GC-01-020-1-20

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

20._UF_29 GC-01-020-1-20

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._UF_29 GC-01-020-1-20

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

22._UF_29 GC-01-020-1-20

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

23._UF_29 GC-01-020-1-20

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

24._UF_29 GC-01-020-1-20

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

25._UF_29 GC-01-020-1-20

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

26._UF_29

95.2 %
31 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._UF_29

96.2 %
39 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

28._UF_29

96.1 %
38 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

29._UF_29 UF_29_Fld#_20_Plt#_5

53.2 %
79 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240