SNP Profiles of UF-29   View Data

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 Key

 1234567891011121314
_Input profile
ATAACTACAGAGCTCTCCCCAGTTCTTT
1._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
2._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
3._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
4._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
5._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
6._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
7._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
8._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
9._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
10._GC-01-020-1-20
ATAACTACAGAGCTCTCCCC_TTCTTT
11._GC-01-020-1-20
ATAACTACAGAGCTCTCCCC_TTCTTT
12._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
13._UF_29
ATAACTAC____CCCCAG_CT_
14._UF_29
ATAACTAC____CCCCAG_CT_
15._UF_29
ATAACTAC____CCCCAG_CT_
16._UF_29
ATAACTAC____CCCCAG_CT_
17._UF_29
ATAACTAC____CCCCAG_CT_
18._UF_29
ATAACTAC____CCCCAG_CT_
19._UF_29
ATAACTAC____CCCCAG_CT_
20._UF_29
ATAACTAC____CCCCAG_CT_
21._UF_29
ATAACTAC____CCCCAG_CT_
22._UF_29
ATAACTAC____CCCCAG_CT_
23._UF_29
ATAACTAC____CCCCAG_CT_
24._UF_29
ATAACTAC____CCCC__CT_
25._UF_29
ATAACTAC____CCCC__CT_
26._UF_29
ATACCTAC____CCCCAG_CT_
27._UF_29
ATACCTAC_____CCAG_CT_
28._UF_29
ATACCTAC____CCCCAA_CT_
29._UF_29_Fld#_20_Plt#_5
AT__ACAGAG_AGGG_AGAAAGAA
 1516171819202122232425262728
_Input profile
ATACAAAGCGCGGGCTAACTGGATATCC
1._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
2._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
3._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
4._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
5._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
6._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
7._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
8._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
9._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
10._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
11._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
12._GC-01-020-1-20
ATACAAAGCGCGGG_AACTGGATATCC
13._UF_29
___AG__GG____ATAT_
14._UF_29
___AG__GG____ATAT_
15._UF_29
___AG__GG____ATAT_
16._UF_29
___AG__GG____ATAT_
17._UF_29
___AG__GG____ATAT_
18._UF_29
___AG__GG____ATAT_
19._UF_29
___AG__GG____ATAT_
20._UF_29
___AG__GG____ATAT_
21._UF_29
___AG__GG____ATAT_
22._UF_29
___AG__GG____ATAT_
23._UF_29
___AG__GG____ATAT_
24._UF_29
___AG__GG____ATAT_
25._UF_29
___AG__GG____ATAT_
26._UF_29
___AG__GG____ATAT_
27._UF_29
___AG__GG____ATAT_
28._UF_29
___AG__GG____ATAT_
29._UF_29_Fld#_20_Plt#_5
ATACAGAGCG_GGAGAGAGGGATATGG
 2930313233343536373839404142
_Input profile
GGATTTGTAGCGCCAGGTGGTTAGCCAG
1._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
2._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
3._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
4._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
5._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
6._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
7._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
8._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
9._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
10._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
11._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
12._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
13._UF_29
GGAT___CG_AGGT__AG__
14._UF_29
GGAT___CG_AGGT__AG__
15._UF_29
GGAT___CG_AGGT__AG__
16._UF_29
GGAT___CG_AGGT__AG__
17._UF_29
GGAT___CG_AGGT__AG__
18._UF_29
GGAT___CG_AGGT__AG__
19._UF_29
GGAT___CG_AGGT__AG__
20._UF_29
GGAT___CG_AGGT__AG__
21._UF_29
GGAT___CG_AGGT__AG__
22._UF_29
GGAT___CG_AGGT__AG__
23._UF_29
GGAT___CG_AGGT__AG__
24._UF_29
GGAT___CG_AGGT__AG__
25._UF_29
GGAT___CG_AGGT__AG__
26._UF_29
GGAT___CG_AGGT__AG__
27._UF_29
GG____CG__GT__AG__
28._UF_29
GGAT___CG_AGGT__AG__
29._UF_29_Fld#_20_Plt#_5
CCATAAACAGCGCCAGACCCAAAGGGAG
 4344454647484950515253545556
_Input profile
CGGGTTAAGGAACCACGGAGTTTTCTCT
1._GC-01-020-1-20
CGGGTTAAGGAACCACGGAGTTTTCTCT
2._GC-01-020-1-20
CGGGTTAAGGAACCACGGAGTTTTCTCT
3._GC-01-020-1-20
CGGGTTAAGGAACCACGGAGTTTTCTCT
4._GC-01-020-1-20
CGGGTTAAGGAACCACGGAGTTTTCTCT
5._GC-01-020-1-20
CGGGTTAAGGAACCACGGAGTTTTCTCT
6._GC-01-020-1-20
CGGGTTAAGGAACCACGGAGTTTTCTCT
7._GC-01-020-1-20
CGGGTTAAGGAACCACGGAGTTTTCTCT
8._GC-01-020-1-20
CGGGTTAAGGAACCACGGAGTTTTCTCT
9._GC-01-020-1-20
CGGGTTAAGGAACC_GGAGTTTTCTCT
10._GC-01-020-1-20
CGGGTTAAGGAACCACGGAGTTTTCTCT
11._GC-01-020-1-20
CGGGTTAAGGAACCACGGAGTTTTCTCT
12._GC-01-020-1-20
CGGGTTAAGGAACCACGGAGTTTTCTCT
13._UF_29
____________CTCT
14._UF_29
____________CTCT
15._UF_29
____________CTCT
16._UF_29
____________CTCT
17._UF_29
____________CTCT
18._UF_29
____________CTCT
19._UF_29
____________CTCT
20._UF_29
____________CTCT
21._UF_29
____________CTCT
22._UF_29
____________CTCT
23._UF_29
____________CTCT
24._UF_29
____________CTCT
25._UF_29
____________CTCT
26._UF_29
____________CTCT
27._UF_29
____________CT_
28._UF_29
____________CTCT
29._UF_29_Fld#_20_Plt#_5
CGCC__GGAAGG_GGAGAAAAAGAG
 5758596061626364656667686970
_Input profile
TTAGCCCTCTACCGAGCCAAGTGGAGTT
1._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
2._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
3._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
4._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
5._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
6._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
7._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
8._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
9._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
10._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
11._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
12._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
13._UF_29
__CC_CTACCG_CCAAGTGG__
14._UF_29
__CC_CTACCG_CCAAGTGG__
15._UF_29
__CC_CTACCG_CCAAGTGG__
16._UF_29
__CC_CTACCG_CCAAGTGG__
17._UF_29
__CC_CTACCG_CCAAGTGG__
18._UF_29
__CC_CTACCG_CCAAGTGG__
19._UF_29
__CC_CTACCG_CCAAGTGG__
20._UF_29
__CC_CTACCG_CCAAGTGG__
21._UF_29
__CC_CTACCG_CCAAGTGG__
22._UF_29
__CC_CTACCG_CCAAGTGG__
23._UF_29
__CC_CTACCG_CCAAGTGG__
24._UF_29
__CC_CTACCG_CCAAGTGG__
25._UF_29
__CC_CTACCG_CCAAGTGG__
26._UF_29
__CC_CTACCG_CCAAGTGG__
27._UF_29
____CTACCG_CCAA_GG__
28._UF_29
____CTACCG_CCAAGTGG__
29._UF_29_Fld#_20_Plt#_5
AAAGGGAGAGACCGAGCCAAACCCAG_
 7172737475767778798081828384
_Input profile
CCAGCTACAGACACAAACCGCCATACCT
1._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
2._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
3._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
4._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
5._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
6._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
7._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
8._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
9._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
10._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
11._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
12._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
13._UF_29
_AGCT_____ACCG___CT
14._UF_29
_AGCT_____ACCG___CT
15._UF_29
_AGCT_____ACCG___CT
16._UF_29
_AGCT_____ACCG___CT
17._UF_29
_AGCT_____ACCG___CT
18._UF_29
_AGCT_____ACCG___CT
19._UF_29
_AGCT_____ACCG___CT
20._UF_29
_AGCT_____ACCG___CT
21._UF_29
_AGCT_____ACCG___CT
22._UF_29
_AGCT_____ACCG___CT
23._UF_29
_AGCT_____ACCG___CT
24._UF_29
_AGCT_____ACCG___CT
25._UF_29
_AGCT_____ACCG___CT
26._UF_29
_AACT_____ACCG___CT
27._UF_29
_AACT_____ACCG___CT
28._UF_29
_AACT_____ACCG___CT
29._UF_29_Fld#_20_Plt#_5
__AGACAGACAC_ACCGGGATACAG
 85868788899091929394    
_Input profile
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
1._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
2._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
3._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
4._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
5._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
6._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
7._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
8._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
9._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
10._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
11._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
12._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
13._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
14._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
15._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
16._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
17._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
18._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
19._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
20._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
21._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
22._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
23._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
24._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
25._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
26._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
27._UF_29
TT____CCGTCT__X_XX_XX_XX_X
28._UF_29
TTCT_AG_CCGTCT__X_XX_XX_XX_X
29._UF_29_Fld#_20_Plt#_5
AA_AA__GGACAGATGGX_XX_XX_XX_X

Input profile: UF_29 GC-01-020-1-20

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

3._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

7._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

8._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._UF_29 GC-01-020-1-20

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._UF_29 GC-01-020-1-20

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

11._UF_29 GC-01-020-1-20

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

12._UF_29 GC-01-020-1-20

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

14._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

15._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

16._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

17._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

18._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

19._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

20._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

21._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

22._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

23._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

24._UF_29

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

25._UF_29

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

26._UF_29

97.4 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._UF_29

96.8 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

28._UF_29

96.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

29._UF_29 UF_29_Fld#_20_Plt#_5

54.4 %
79 shared markers

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USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240