SNP Profiles of CRU156(MIS_TTOICGT_GU175/P) View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	GG	CC	TT	CC	TT	TT	CC	CC	AA	GG	CC	AG
1._RUQ_880	_	GG	GG	CC	_	_	_	TT	_	_	_	_	CC	AA
2._CRU_156	CC	GG	CG	CT	CT	AA	CT	GT	CC	_	AA	GG	CT	AA
3._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
4._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
5._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
6._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
7._CRU_156	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
8._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
9._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
10._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
11._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
12._GC-01-131-7-08	CC	AA	CG	CT	TT	AA	CC	GT	CC	CC	AA	AG	CT	AA
13._RUQ_880	_	_	CG	_	_	_	_	GT	_	TT	_	AA	_	AG
14._RUQ_880	GG	GG	CC	GG	AA	CC	AA	AA	_	_	AA	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	GG	CC	CC	GG	GG	AA	CC	CC	CC	GG	CC	AA
1._RUQ_880	_	_	_	_	CC	GG	GG	_	CC	CC	CC	GG	CC	AA
2._CRU_156	CT	AA	GG	CT	CT	CC	GG	AG	_	AC	GG	GG	CT	AC
3._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
4._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
5._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
6._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
7._CRU_156	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
8._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
9._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
10._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
11._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
12._GC-01-131-7-08	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	GT	CC	CC
13._RUQ_880	_	_	_	_	_	GG	GT	AA	_	CC	CC	_	_	CC
14._RUQ_880	GG	AA	GG	GG	GG	CC	CC	_	GG	CC	CC	CC	_	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	GG	CC	AA	TT	GT	AA	TT	GG	X_X	X_X
1._RUQ_880	AG	_	AA	CC	GG	CC	AA	TT	TT	AA	_	_	X_X	X_X
2._CRU_156	AA	GG	AA	CT	AA	GG	CC	CT	GT	AC	TT	GG	X_X	X_X
3._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
4._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
5._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
6._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
7._CRU_156	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
8._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
9._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
10._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
11._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
12._GC-01-131-7-08	AA	GG	AT	CT	AG	GG	AC	CT	GT	AA	AT	GG	X_X	X_X
13._RUQ_880	_	_	_	_	AG	_	_	_	_	CC	_	_	X_X	X_X
14._RUQ_880	_	GG	AA	GG	GG	GG	AA	AA	AA	AA	TT	GG	X_X	X_X

Input profile: CRU_156 RUQ_880

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._CRU_156 RUQ_880

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._CRU_156

60.5 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 1 A X2 Y1

Dapeng Zhang, 2016

3._CRU_156

60 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 6

Dapeng Zhang, 2016

4._CRU_156

60 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 5

Dapeng Zhang, 2016

5._CRU_156

60 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 3

Dapeng Zhang, 2016

6._CRU_156

60 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 2

Dapeng Zhang, 2016

7._CRU_156

60 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._CRU_156 GC-01-131-7-08

60 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._CRU_156 GC-01-131-7-08

60 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._CRU_156 GC-01-131-7-08

60 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._CRU_156 GC-01-131-7-08

60 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

12._CRU_156 GC-01-131-7-08

60 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

13._CRU_156 RUQ_880

53.8 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

14._CRU_156 RUQ_880

47.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25