SNP Profiles of CC 137   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CTAGCGCTTTAACCTTCTCTAAAACTAG
1._CC_137
CTAGCGCTTTAACCTTCTCTAAAACTAG
2._CC_137
CTAGCGCTTTAACCTTCTCTAAAACTAG
3._CC_137
CTAGCGCTTTAACCTTCTCTAAAACTAG
4._GC-01-134-7-11
CTAGCGCTTTAACCTTCTCTAAAACTAG
5._GC-01-134-7-11
CTAGCGCTTTAACCTTCTCTAAAACTAG
6._GC-01-134-7-11
CTAGCGCTTTAACCTTCTCTAAAACTAG
7._GC-01-134-7-11
CTAGCGCTTTAACCTTCTCTAAAACTAG
8._RUQ_1637
CTAG_CTTTAACCTTCTCTAAAACTAG
9._RUQ_1637
_AGCGCT___TT____CTAG
10._CC_137
__GGCTTTAA_TTCTCTAAAACTAG
11._CC_137
CTGGGGCTTTAACTGTCCCTAAAACTAA
12._GC-01-134-7-11
CTGGGGCTTTAACTGTCCCTAAAACTAA
13._RUQ_1637
AGAGCCAGAAAAGGAA__AAAAAGAG
14._MITC-000809
AGAGCCAGAAAAGGAA__AAAAAGAG
 1516171819202122232425262728
_Input profile
CTAAGGTTCCGGGGGGCTCCCCTTCTCC
1._CC_137
CTAAGGTTCCGGGGGGCTCCCCTTCTCC
2._CC_137
CTAAGGTTCCGGGGGGCTCCCCTTCTCC
3._CC_137
CTAAGGTTCCGGGGGGCTCCCCTTCTCC
4._GC-01-134-7-11
CTAAGGTTCCGGGGGGCTCCCCTTCTCC
5._GC-01-134-7-11
CTAAGGTTCCGGGGGGCTCCCCTTCTCC
6._GC-01-134-7-11
CTAAGGTTCCGGGGGGCTCCCCTTCTCC
7._GC-01-134-7-11
CTAAGGTTCCGGGGGGCTCCCCTTCTCC
8._RUQ_1637
CTAAGGTTCCGGGGAGCTCCCCTTCTCC
9._RUQ_1637
____CCGGGG_CTCCCCTT-CC
10._CC_137
CTAAGGTTCCGGGGAGCT_CCTTCTCC
11._CC_137
CCAAGGTTCCCCGTAACCCCCCGTCTCC
12._GC-01-134-7-11
CCAAGGTTCCCCGTAACCCCCCGTCTCC
13._RUQ_1637
AGAAGGAAGGCCCC_AGCCCCAA_CC
14._MITC-000809
AGAAGGAAGGCCCC_AGCCCCAA_CC
 293031323334353637383940  
_Input profile
AGGGAACTAACCACCTGTCCTTGGX_XX_X
1._CC_137
AGGGAACTAACCACCTGTCCTTGGX_XX_X
2._CC_137
AGGGAACTAACCACCTGTCCTTGGX_XX_X
3._CC_137
AGGGAACTAACCACCTGTCC_GGX_XX_X
4._GC-01-134-7-11
AGGGAACTAACCACCTGTCC_GGX_XX_X
5._GC-01-134-7-11
AGGGAACTAACCACCTGTCCTTGGX_XX_X
6._GC-01-134-7-11
AGGGAACTAACCACCTGTCCTTGGX_XX_X
7._GC-01-134-7-11
AGGGAACTAACCACCTGTCCTTGGX_XX_X
8._RUQ_1637
AGGGAACTAACCACCTGTCCTTGGX_XX_X
9._RUQ_1637
AG_AACTAACCACCTGTCC__X_XX_X
10._CC_137
AGGG_CTAA_AC_GTCCTTGGX_XX_X
11._CC_137
AAGGATCCAGGGAACTGGACATGGX_XX_X
12._GC-01-134-7-11
AAGGATCCAGGGAACTGGACATGGX_XX_X
13._RUQ_1637
_GGAAAGAAGGACAGACCCTTGGX_XX_X
14._MITC-000809
_GGAAAGAAGGACAGACCCTTGGX_XX_X

Input profile: CC_137

 
Mars Center for Cocoa Science, Brazil
Location: 1711 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._CC_137

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1711 6
 Dapeng Zhang, 2016

2._CC_137

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1711 5
 Dapeng Zhang, 2016

3._CC_137

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1711 1
 Dapeng Zhang, 2016

4._CC_137 GC-01-134-7-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._CC_137 GC-01-134-7-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._CC_137 GC-01-134-7-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._CC_137 GC-01-134-7-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._CC_137 RUQ_1637

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._CC_137 RUQ_1637

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._CC_137

95.5 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

11._CC_137

57.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1711 4
 Dapeng Zhang, 2016

12._CC_137 GC-01-134-7-11

57.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._CC_137 RUQ_1637

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

14._CC_137 MITC-000809

48.6 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25