SNP Profiles of ICS%201 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	CT
1._RUQ_847	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
2._NA	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
3._NA	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
4._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
5._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
6._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
7._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
8._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
9._NA	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
10._NA	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
11._NA	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
12._NA	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
13._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
14._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	_	CC	TT
15._RUQ_847	_	_	AA	_	_	_	_	AG	_	_	_	_	AC	_
16._RUQ_847	_	_	AA	_	CC	AA	CG	AG	_	AT	_	_	_	_
17._RUQ_847	_	_	AA	GT	CC	AA	CG	AG	CT	AT	_	AG	CC	TT
18._ICS_1	GG	AT	AC	GT	CC	AA	CC	AA	CC	AA	GG	AG	AA	CT
19._ICS1	_	_	CC	_	CT	AC	CG	AG	_	TT	_	_	_	_
20._RUQ_847	GG	AT	AA	AC	GG	AA	CG	AG	AG	AT	GG	_	CC	_
21._MITC-000297	GG	AT	AA	AC	GG	AA	CG	AG	AG	AT	GG	_	CC	_
22._ICS_1_Fld#_73_Plt#_2	GG	AT	AA	AC	GG	AA	CG	AG	AG	AT	GG	_	CC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
1._RUQ_847	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
2._NA	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
3._NA	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
4._ICS_1	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
5._ICS_1	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
6._ICS_1	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
7._ICS_1	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
8._ICS_1	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
9._NA	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
10._NA	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
11._NA	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
12._NA	TT	_	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
13._ICS_1	TT	_	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
14._ICS_1	TT	CC	AC	TT	GG	GT	_	CC	TT	GG	AA	TT	AG	TT
15._RUQ_847	_	CC	AC	_	GG	GT	CG	_	_	_	_	_	AG	_
16._RUQ_847	_	CC	AC	_	_	_	CG	CC	_	_	_	TT	_	TT
17._RUQ_847	TT	CC	AA	TT	_	GT	CG	CC	_	_	_	_	AG	TT
18._ICS_1	GG	CG	CC	TT	AA	GG	GG	CC	TT	CG	AA	TT	AG	CC
19._ICS1	_	CC	CC	_	_	_	CG	CT	_	_	_	CT	_	CC
20._RUQ_847	AA	CC	AC	AA	_	AC	CG	GG	AA	GG	AA	AA	AG	AA
21._MITC-000297	AA	CC	AC	AA	_	AC	CG	GG	AA	GG	AA	AA	AG	AA
22._ICS_1_Fld#_73_Plt#_2	AA	CC	AC	AA	_	AC	CG	GG	AA	GG	AA	AA	AG	AA

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AA	CT	CT	TT	CC	AA	TT	CT	GG	AG	TT	X_X	X_X
1._RUQ_847	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AG	TT	X_X	X_X
2._NA	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
3._NA	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
4._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
5._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
6._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
7._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
8._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
9._NA	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
10._NA	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
11._NA	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
12._NA	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
13._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
14._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
15._RUQ_847	AA	_	TT	_	TT	_	_	_	_	GG	_	_	X_X	X_X
16._RUQ_847	_	_	_	_	_	_	_	_	_	CC	_	_	X_X	X_X
17._RUQ_847	_	_	_	_	TT	_	_	_	CT	GG	AA	_	X_X	X_X
18._ICS_1	GG	AA	CC	CC	TT	TT	AC	TT	CT	GG	GG	CT	X_X	X_X
19._ICS1	_	_	_	_	_	_	_	_	_	CG	_	_	X_X	X_X
20._RUQ_847	AA	AA	_	_	AA	GG	AA	AA	AG	CC	AA	AA	X_X	X_X
21._MITC-000297	AA	AA	_	_	AA	GG	AA	AA	AG	CC	AA	AA	X_X	X_X
22._ICS_1_Fld#_73_Plt#_2	AA	AA	_	_	AA	GG	AA	AA	AG	CC	AA	AA	X_X	X_X

Input profile: ICS_1 RUQ_847

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._ICS_1 RUQ_847

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

3._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

4._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

5._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

6._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

7._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

8._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

12._ICS_1 NA

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

13._ICS_1

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

14._ICS_1

94.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

15._ICS_1 RUQ_847

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

16._ICS_1 RUQ_847

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

17._ICS_1 RUQ_847

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._ICS_1

65 %
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

19._ICS_1 ICS1

57.7 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

20._ICS_1 RUQ_847

52.9 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

21._ICS_1 MITC-000297

52.9 %
35 shared markers

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USDA-SHRS, United States of America

22._ICS_1 ICS_1_Fld#_73_Plt#_2

52.9 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 73, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520