SNP Profiles of EET 58 [ECU]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CGATCCGTCTCCCGAACCATGGAGACCT
1._EET_58_[ECU]
CGATCCGTCTCCCGAACCATAGAGACCT
2._EET_58_[ECU]
CGATCCGTCTCCCCAGCCATAGGGACCT
3._EET_58_[ECU]
CGATCCGTCTCCCCAGCCATAGGGACCT
4._EET_58_[ECU]
CGATCCGTCTCCCCAGCCATAGGGACCT
5._EET_58_[ECU]
CGATCCGTCTCCCCAGCCATAGGGACCT
6._EET_58_[ECU]
CGATCCGTCTCCCCAGCCATAGGGACCT
7._EET_58_[ECU]
CGATCCGTCTCCCCAGCCATAGGGACCT
8._EET_58_[ECU]
CGATCCGTCTCCCCAGCCATAGGGACCT
9._EET_58_[ECU]
CGATCCGTCTCCCCAGCCATAGGGACCT
10._GC-08-287-8-59
CGATCCGTCTCCCCAGCCATAGGGACCT
11._GC-08-287-8-59
CGATCCGTCTCCCCAGCCATAGGGACCT
12._GC-08-287-8-59
CGATCCGTCTCCCCAGCCATAGGGACCT
13._GC-08-287-8-59
CGATCCGTCTCCCCAGCCATAGGGACCT
14._GC-08-287-8-59
CGATCCGTCTCCCCAGCCATAGGGACCT
15._GC-08-287-8-59
CGATCCGTCTCCCCAGCCATAGGGACCT
16._GC-08-287-8-59
CGATCCGTCTCCCCAGCCATAGGGACCT
17._GC-08-287-8-59
CGATCCGTCTCCCCAGCCATAGGGACCT
18._GC-08-287-8-59
CGATCCGTCTCCCCAGCCATAGGGACCT
19._EET_58_[ECU]
CGATCCGTCTCCCCAGCCATAGGGACCT
 1516171819202122232425262728
_Input profile
GTCGCCCTAGGGGGCTCTGGATTTAGCC
1._EET_58_[ECU]
GTCGCCTTAGGGGGCTCTGGATTTAGCC
2._EET_58_[ECU]
GGCGCCTTAGGGGGCTCTGGATTTAGCC
3._EET_58_[ECU]
GGCGCCTTAGGGGGCTCTGGATTTAGCC
4._EET_58_[ECU]
GGCGCCTTAGGGGGCTCTGGATTTAGCC
5._EET_58_[ECU]
GGCGCCTTAGGGGGCTCTGGATTTAGCC
6._EET_58_[ECU]
GGCGCCTTAGGGGGCTCTGGATTTAGCC
7._EET_58_[ECU]
GGCGCCTTAGGGGGCTCTGGATTTAGCC
8._EET_58_[ECU]
GGCGCCTTAGGGGGCTCTGGATTTAGCC
9._EET_58_[ECU]
GGCGCCTTAGGGGGCTCTGGATTTAGCC
10._GC-08-287-8-59
GGCGCCTTAGGGGGCTCTGGATTTAGCC
11._GC-08-287-8-59
GGCGCCTTAGGGGGCTCTGGATTTAGCC
12._GC-08-287-8-59
GGCGCCTTAGGGGGCTCTGGATTTAGCC
13._GC-08-287-8-59
GGCGCCTTAGGGGGCTCTGGATTTAGCC
14._GC-08-287-8-59
GGCGCCTTAGGGGGCTCTGGATTTAGCC
15._GC-08-287-8-59
GGCGCCTTAGGGGGCTCTGGATTTAGCC
16._GC-08-287-8-59
GGCGCCTTAGGGGGCTCTGGATTTAGCC
17._GC-08-287-8-59
GGCGCCTTAGGGGGCTCTGGATTTAGCC
18._GC-08-287-8-59
GGCGCCTTAGGGGGCTCTGGATTTAGCC
19._EET_58_[ECU]
GGCGCCTTAGGGGGCTCTGGATTTAGCC
 293031323334353637383940  
_Input profile
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
1._EET_58_[ECU]
AGATCTCTGTCTACCTCTCGAGCTX_XX_X
2._EET_58_[ECU]
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
3._EET_58_[ECU]
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
4._EET_58_[ECU]
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
5._EET_58_[ECU]
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
6._EET_58_[ECU]
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
7._EET_58_[ECU]
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
8._EET_58_[ECU]
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
9._EET_58_[ECU]
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
10._GC-08-287-8-59
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
11._GC-08-287-8-59
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
12._GC-08-287-8-59
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
13._GC-08-287-8-59
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
14._GC-08-287-8-59
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
15._GC-08-287-8-59
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
16._GC-08-287-8-59
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
17._GC-08-287-8-59
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
18._GC-08-287-8-59
AGAACTCTGTCTAACTCTCGAGCCX_XX_X
19._EET_58_[ECU]
AGAACTCTGTCTAACTCTCGAGCCX_XX_X

Input profile: EET_58_[ECU] RUQ_383

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._EET_58_[ECU]

96.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F465 T10
 Dapeng Zhang, 2016

2._EET_58_[ECU]

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 3
 Dapeng Zhang, 2016

3._EET_58_[ECU]

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 9
 Dapeng Zhang, 2016

4._EET_58_[ECU]

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 8
 Dapeng Zhang, 2016

5._EET_58_[ECU]

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 7
 Dapeng Zhang, 2016

6._EET_58_[ECU]

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 6
 Dapeng Zhang, 2016

7._EET_58_[ECU]

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 5
 Dapeng Zhang, 2016

8._EET_58_[ECU]

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 4
 Dapeng Zhang, 2016

9._EET_58_[ECU]

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 10
 Dapeng Zhang, 2016

10._EET_58_[ECU] GC-08-287-8-59

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._EET_58_[ECU] GC-08-287-8-59

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._EET_58_[ECU] GC-08-287-8-59

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._EET_58_[ECU] GC-08-287-8-59

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._EET_58_[ECU] GC-08-287-8-59

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._EET_58_[ECU] GC-08-287-8-59

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._EET_58_[ECU] GC-08-287-8-59

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._EET_58_[ECU] GC-08-287-8-59

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._EET_58_[ECU] GC-08-287-8-59

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._EET_58_[ECU]

80 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 

 Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520