SNP Profiles of UF 29   View Data

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 Key

 1234567891011121314
_Input profile
CGATCCGTCTACCCAACCATAGACCTGT
1._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
2._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
3._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
4._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
5._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
6._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
7._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
8._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
9._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
10._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
11._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
12._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
13._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
14._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
15._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
16._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
17._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
18._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
19._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
20._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
21._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
22._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
23._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
24._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
25._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
26._UF_29
CGATCCGTCTAC_AACCAT_ACCT_
27._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
28._UF_29
CGATCCGTCTAC_AACCATAGACCTGT
29._UF_29_Fld#_20_Plt#_5
CGATCCACAGACGGAAGGAT_AC_AC
 1516171819202122232425262728
_Input profile
CGACCTAGGGGGCTCTGGATTTAGCCAG
1._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
2._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
3._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
4._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
5._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
6._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
7._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
8._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
9._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
10._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
11._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
12._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
13._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
14._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
15._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
16._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
17._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
18._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
19._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
20._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
21._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
22._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
23._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
24._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
25._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
26._UF_29
CGACCTAAGGGGCTCTGG_TT__AG
27._UF_29
CGACCTAAGGGGCTCTGGATTTAGCCAG
28._UF_29
CGACCTAAGGGGCTCTGGATTTAGCCAG
29._UF_29_Fld#_20_Plt#_5
CGACAG_CCCCAGAGGGATAAAGGGAG
 2930313233343536373839   
_Input profile
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
1._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
2._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
3._UF_29
ATCTCCGT_AACTCTCGAGCTX_XX_XX_X
4._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
5._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
6._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
7._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
8._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
9._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
10._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
11._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
12._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
13._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
14._GC-01-020-1-20
ATCTCCGT_AACTCTCGAGCTX_XX_XX_X
15._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
16._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
17._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
18._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
19._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
20._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
21._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
22._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
23._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
24._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
25._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
26._UF_29
AT_CCGTCTACCTCTCGAG_X_XX_XX_X
27._UF_29
ATCTCCGTCTACCTCTCGAGCTX_XX_XX_X
28._UF_29
ATCTCCGTCTACCTCTCGAGCTX_XX_XX_X
29._UF_29_Fld#_20_Plt#_5
AT__ACAG_AGAGCGAGAGX_XX_XX_X

Input profile: UF_29

 
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Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

1._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

2._UF_29 GC-01-020-1-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._UF_29

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

4._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

5._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

6._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

7._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

8._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

9._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

10._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

11._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

12._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

13._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

14._UF_29 GC-01-020-1-20

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._UF_29 GC-01-020-1-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._UF_29 GC-01-020-1-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

17._UF_29 GC-01-020-1-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

18._UF_29 GC-01-020-1-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

19._UF_29 GC-01-020-1-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._UF_29 GC-01-020-1-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

21._UF_29 GC-01-020-1-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._UF_29 GC-01-020-1-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

23._UF_29 GC-01-020-1-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

24._UF_29 GC-01-020-1-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

25._UF_29 GC-01-020-1-20

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

26._UF_29

95.2 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._UF_29

96.2 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

28._UF_29

96.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

29._UF_29 UF_29_Fld#_20_Plt#_5

48.5 %
33 shared markers

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USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520