SNP Profiles of UF%2029   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CGATCCGTCTACCCAACCATAGACCTGT
1._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
2._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
3._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
4._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
5._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
6._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
7._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
8._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
9._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
10._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
11._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
12._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
13._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
14._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
15._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
16._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
17._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
18._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
19._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
20._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
21._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
22._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
23._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
24._GC-01-020-1-20
CGATCCGTCTACCCAACCATAGACCTGT
25._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
26._UF_29
CGATCCGTCTACCCAACCATAGACCTGT
27._UF_29
CGATCCGTCTAC_AACCATAGACCTGT
28._UF_29
CGATCCGTCTAC_AACCAT_ACCT_
29._UF_29_Fld#_20_Plt#_5
CGATCCACAGACGGAAGGAT_AC_AC
 1516171819202122232425262728
_Input profile
CGACCTAGGGGGCTCTGGATTTAGCCAG
1._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
2._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
3._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
4._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
5._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
6._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
7._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
8._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
9._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
10._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
11._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
12._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
13._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
14._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
15._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
16._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
17._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
18._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
19._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
20._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
21._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
22._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
23._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
24._GC-01-020-1-20
CGACCTAGGGGGCTCTGGATTTAGCCAG
25._UF_29
CGACCTAGGGGGCTCTGGATTTAGCCAG
26._UF_29
CGACCTAAGGGGCTCTGGATTTAGCCAG
27._UF_29
CGACCTAAGGGGCTCTGGATTTAGCCAG
28._UF_29
CGACCTAAGGGGCTCTGG_TT__AG
29._UF_29_Fld#_20_Plt#_5
CGACAG_CCCCAGAGGGATAAAGGGAG
 2930313233343536373839   
_Input profile
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
1._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
2._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
3._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
4._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
5._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
6._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
7._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
8._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
9._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
10._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
11._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
12._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
13._GC-01-020-1-20
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
14._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
15._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
16._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
17._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
18._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
19._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
20._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
21._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
22._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
23._UF_29
ATCTCCGTCTAACTCTCGAGCTX_XX_XX_X
24._GC-01-020-1-20
ATCTCCGT_AACTCTCGAGCTX_XX_XX_X
25._UF_29
ATCTCCGT_AACTCTCGAGCTX_XX_XX_X
26._UF_29
ATCTCCGTCTACCTCTCGAGCTX_XX_XX_X
27._UF_29
ATCTCCGTCTACCTCTCGAGCTX_XX_XX_X
28._UF_29
AT_CCGTCTACCTCTCGAG_X_XX_XX_X
29._UF_29_Fld#_20_Plt#_5
AT__ACAG_AGAGCGAGAGX_XX_XX_X

Input profile: UF_29

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

1._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

2._UF_29 GC-01-020-1-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._UF_29 GC-01-020-1-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

4._UF_29 GC-01-020-1-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

5._UF_29 GC-01-020-1-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._UF_29 GC-01-020-1-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._UF_29 GC-01-020-1-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._UF_29 GC-01-020-1-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

9._UF_29 GC-01-020-1-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._UF_29 GC-01-020-1-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

11._UF_29 GC-01-020-1-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

12._UF_29 GC-01-020-1-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._UF_29 GC-01-020-1-20

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

15._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

16._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

17._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

18._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

19._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

20._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

21._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

22._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

23._UF_29

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

24._UF_29 GC-01-020-1-20

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._UF_29

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

26._UF_29

97.4 %
39 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._UF_29

97.4 %
38 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

28._UF_29

96.8 %
31 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

29._UF_29 UF_29_Fld#_20_Plt#_5

48.5 %
33 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520