SNP Profiles of PA 70 [PER]   View Data

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 Key

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_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._GC-04-053-3-17
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._PA70[PER]
__CC_________CC_
3._RUQ_33
_AGGGCT___TT____CCAG
4._PA_70_[PER]
CCAGGGCTTTACCCTTCC_AAAGCCAG
5._PA_70_[PER]
CCAGGGCTTTACCCTTCCCCAAAGCCAG
6._GC-04-053-3-17
CCAGGGCTTTACCCTTCCCCAAAGCCAG
7._RUQ_33
CCAGGGCTTTACCCTTCCCCAAAGCCAG
8._GC-04-53-3-17
GGAGCCAGAAACGGAA__AAAGGGAG
9._RUQ_33
GGAGCCAGAAACGGAA__AAAGGGAG
10._MITC-000025
GGAGCCAGAAACGGAA__AAAGGGAG
11._MITC-000026
GGAGCCAGAAACGGAA__AAAGGGAG
12._PA_70_[PER]_Fld#_185_Plt#_1
AGAGCGAGAACCAGAA__AAGGGGAG
 1516171819202122232425262728
_Input profile
TTAAGGTTCCCGGTGGTTACCCTTTTCC
1._GC-04-053-3-17
TTAAGGTTCCCGGTGGTTACCCTTTTCC
2._PA70[PER]
CC___CCCC___ACCG___
3._RUQ_33
____CCGGGG_TTACCGGGTTAA
4._PA_70_[PER]
CCAACGCTCCGGGGAATTACCGGGTTAA
5._PA_70_[PER]
CCAACGCTCCGGGGAGTTACCGGGTTAA
6._GC-04-053-3-17
CCAACGCTCCGGGGAGTTACCGGGTTAA
7._RUQ_33
CCAACGCTCCGGGGAATTACCGGGTTAA
8._GC-04-53-3-17
GGAACGAGGGCCCC_AAACCGCC_AA
9._RUQ_33
GGAACGAGGGCCCC_AAACCGCC_AA
10._MITC-000025
GGAACGAGGGCCCC_AAACCGCC_AA
11._MITC-000026
GGAACGAGGGCCCC_AAACCGCC_AA
12._PA_70_[PER]_Fld#_185_Plt#_1
GGAACCGGGGCCCC_AACCGG__AA
 293031323334353637383940  
_Input profile
AGGGATCTAGCGAACCGTAAATGGX_XX_X
1._GC-04-053-3-17
AGGGATCTAGCGAACCGTAAATGGX_XX_X
2._PA70[PER]
__AA_AGGGAACC_AA__X_XX_X
3._RUQ_33
AA_AACCAGCCAACCGGAA__X_XX_X
4._PA_70_[PER]
AAGGAACCAG_AACCGGAAATGGX_XX_X
5._PA_70_[PER]
AAGGAACCAGCCAACCGGAAATGGX_XX_X
6._GC-04-053-3-17
AAGGAACCAGCCAACCGGAAATGGX_XX_X
7._RUQ_33
AAGGAACCAGCCAACCGGAAATGGX_XX_X
8._GC-04-53-3-17
_GGAAGGAGGGAAGGCCAAATGGX_XX_X
9._RUQ_33
_GGAAGGAGGGAAGGCCAAATGGX_XX_X
10._MITC-000025
_GGAAGGAGGGAAGGCCAAATGGX_XX_X
11._MITC-000026
_GGAAGGAGGGAAGGCCAAATGGX_XX_X
12._PA_70_[PER]_Fld#_185_Plt#_1
_GGAAGGAGGGACAGCCAAATGGX_XX_X

Input profile: PA_70_[PER]

 
Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._PA_70_[PER] GC-04-053-3-17

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

2._PA_70_[PER] PA70[PER]

50 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

3._PA_70_[PER] RUQ_33

54.2 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_70_[PER]

57.9 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D634
 Dapeng Zhang, 2016

5._PA_70_[PER]

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 6 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._PA_70_[PER] GC-04-053-3-17

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2 (verde)
 Mars, 2018

7._PA_70_[PER] RUQ_33

55 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._PA_70_[PER] GC-04-53-3-17

35.7 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

9._PA_70_[PER] RUQ_33

35.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

10._PA_70_[PER] MITC-000025

35.7 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

11._PA_70_[PER] MITC-000026

35.7 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

12._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

27.9 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 185, Tree: 1
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25