SNP Profiles of IMC 67   View Data

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 Key

 1234567891011121314
_Input profile
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
1._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
2._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
3._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
4._GC-05-082-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
5._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
6._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
7._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
8._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
9._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
10._GC-05-82-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
11._GC-05-82-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
12._GC-05-82-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
13._GC-05-82-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
14._RUQ_1056
CCAGGGTTCTCCTTGTCCCCAAGGCCAG
15._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAG
16._RUQ_1056
_AGGGTT___GT____CCAA
17._IMC67
__CG_________CC_
18._RUQ_1056
GGAGCCAAAGCCAAAC__AAGGGGAA
19._GC-05-82-2-33
GGAGCCAAAGCCAAAC__AAGGGGAA
20._GC-05-82-2-33
GGAGCCAAAGCCAAAC__AAGGGGAA
21._IMC_67_Fld#_152A_Plt#_1
GGAGCCAAAGCCAAAC__AAGGGGAA
22._IMC_67_Fld#_152B_Plt#_4
GGAAGGAGAGCCAAAA__AAGGGGAA
 1516171819202122232425262728
_Input profile
TTAAGGCCCTCCGGAACCACGGGTCCAC
1._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
2._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
3._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
4._GC-05-082-2-33
TTAAGGCCCTCCGGAACCACGGGTCCAC
5._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
6._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
7._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
8._IMC_67
TTAAGGCCCTCCGG_CCACGGGTCCAC
9._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
10._GC-05-82-2-33
TTAAGGCCCTCCGGAACCACGGGTCCAC
11._GC-05-82-2-33
TTAAGGCCCTCCGGAACCACGGGTCCAC
12._GC-05-82-2-33
TTAAGGCCCTCCGGAACCACGGGTCCAC
13._GC-05-82-2-33
TTAAGGCCCTCCGG_CCACGGGTCCAC
14._RUQ_1056
TTAAGGCCCTCCGGAACCACGGGTCCAC
15._IMC_67
TTAAGGCCCTCCGGAACCACGGGTCCAC
16._RUQ_1056
____TTCCGG_CCACCGGTCCAC
17._IMC67
CC___CCCG___ACGG___
18._RUQ_1056
AAAAGGGGAGGGCC_GGACCGAC_AC
19._GC-05-82-2-33
AAAAGGGGAGGGCC_GGACCGAC_AC
20._GC-05-82-2-33
AAAAGGGGAGGGCC_GGACCGAC_AC
21._IMC_67_Fld#_152A_Plt#_1
AAAAGGGGAGGGCC_GGACCGAC_AC
22._IMC_67_Fld#_152B_Plt#_4
AGATCGAAAGGGCC_AAACGGCC_CC
 2930313233343536373839   
_Input profile
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
1._IMC_67
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
2._IMC_67
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
3._IMC_67
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
4._GC-05-082-2-33
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
5._IMC_67
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
6._IMC_67
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
7._IMC_67
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
8._IMC_67
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
9._IMC_67
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
10._GC-05-82-2-33
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
11._GC-05-82-2-33
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
12._GC-05-82-2-33
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
13._GC-05-82-2-33
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
14._RUQ_1056
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
15._IMC_67
AAGGCTAGCGACCTGTCCTTGGX_XX_XX_X
16._RUQ_1056
AA_CTAGCGACCTGTCC__X_XX_XX_X
17._IMC67
___AAGGACCT_AA__X_XX_XX_X
18._RUQ_1056
_GGAGAGCGACAGACCCTTGGX_XX_XX_X
19._GC-05-82-2-33
_GGAGAGCGACAGACCCTTGGX_XX_XX_X
20._GC-05-82-2-33
_GGAGAGCGACAGACCCTTGGX_XX_XX_X
21._IMC_67_Fld#_152A_Plt#_1
_GGAGAGCGACAGACCCTTGGX_XX_XX_X
22._IMC_67_Fld#_152B_Plt#_4
_GGAGGGGGCCAACCACAACGX_XX_XX_X

Input profile: IMC_67

 
Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._IMC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

2._IMC_67

identical
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

3._IMC_67

identical
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

4._IMC_67 GC-05-082-2-33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

5._IMC_67

identical
39 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

6._IMC_67

identical
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

7._IMC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

8._IMC_67

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

9._IMC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

10._IMC_67 GC-05-82-2-33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

11._IMC_67 GC-05-82-2-33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

12._IMC_67 GC-05-82-2-33

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

13._IMC_67 GC-05-82-2-33

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

14._IMC_67 RUQ_1056

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._IMC_67

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 647
 Dapeng Zhang, 2016

16._IMC_67 RUQ_1056

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._IMC_67 IMC67

50 %
12 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

18._IMC_67 RUQ_1056

48.5 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

19._IMC_67 GC-05-82-2-33

48.5 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

20._IMC_67 GC-05-82-2-33

48.5 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._IMC_67 IMC_67_Fld#_152A_Plt#_1

48.5 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

22._IMC_67 IMC_67_Fld#_152B_Plt#_4

29.4 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 152B, Tree: 4
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25