SNP Profiles of ICS%206 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
1._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
2._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
3._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
4._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
5._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
6._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
7._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
8._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
9._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
10._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
11._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
12._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
13._GC-08-049-1-60	CT	AG	CG	CT	TT	AA	_	GT	CT	CT	AA	AA	CT	AA
14._ICS_6	CT	AG	CG	CT	TT	AA	_	GT	CT	CT	AA	AA	CT	AA
15._ICS_6	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
16._RUQ_721	_	AG	CG	TT	CT	AA	CC	TT	CC	CT	AA	AA	CC	AA
17._ICS_6	TT	AA	GG	TT	TT	AA	CC	TT	CC	_	TT	AA	CC	AA
18._RUQ_721	_	_	CG	_	_	_	_	TT	_	TT	_	AA	_	AA
19._RUQ_721	_	AA	CG	TT	_	_	_	TT	_	_	_	_	CC	AA
20._GC-08-49-1-60	AG	AG	CC	AG	AA	AA	GG	AA	_	_	AA	AA	AG	AA
21._RUQ_721	AA	AA	CC	AA	AA	AA	GG	AA	_	_	AA	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
1._GC-08-049-1-60	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
2._GC-08-049-1-60	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
3._GC-08-049-1-60	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
4._GC-08-049-1-60	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
5._GC-08-049-1-60	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
6._GC-08-049-1-60	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
7._ICS_6	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
8._ICS_6	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
9._ICS_6	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
10._ICS_6	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
11._ICS_6	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
12._GC-08-049-1-60	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
13._GC-08-049-1-60	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
14._ICS_6	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
15._ICS_6	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
16._RUQ_721	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	TT	CT	CC
17._ICS_6	CT	AA	GG	TT	CC	CC	GG	AG	CT	AC	CC	TT	CT	CC
18._RUQ_721	_	_	_	_	_	CC	GG	AG	_	AC	CC	_	_	CC
19._RUQ_721	_	_	_	_	CC	CC	GG	_	CT	AA	CC	TT	CT	CC
20._GC-08-49-1-60	AG	AA	GG	AA	GG	CG	AC	_	AG	AC	CC	AC	_	CC
21._RUQ_721	AG	AA	GG	AA	GG	GG	CC	_	AG	AC	CC	AA	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
1._GC-08-049-1-60	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
2._GC-08-049-1-60	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
3._GC-08-049-1-60	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
4._GC-08-049-1-60	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
5._GC-08-049-1-60	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
6._GC-08-049-1-60	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
7._ICS_6	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
8._ICS_6	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
9._ICS_6	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
10._ICS_6	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
11._ICS_6	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
12._GC-08-049-1-60	AG	GG	AT	CT	_	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
13._GC-08-049-1-60	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
14._ICS_6	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
15._ICS_6	AG	GG	AT	CT	_	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
16._RUQ_721	AA	GG	AT	CC	GG	CC	AA	CC	GT	CC	AT	GG	X_X	X_X
17._ICS_6	AA	GG	AT	CC	GG	_	AA	CC	GT	CC	AT	GG	X_X	X_X
18._RUQ_721	_	_	_	_	GG	_	_	_	_	CC	_	_	X_X	X_X
19._RUQ_721	AA	_	AT	CC	GG	CC	AA	CC	GT	CC	_	_	X_X	X_X
20._GC-08-49-1-60	_	GG	AT	AG	AG	CG	AC	AG	AC	AC	AT	GG	X_X	X_X
21._RUQ_721	_	GG	AT	GG	GG	GG	AA	GG	AC	CC	AT	GG	X_X	X_X

Input profile: ICS_6

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Mars Center for Cocoa Science, Brazil

Location: 8160 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._ICS_6 GC-08-049-1-60

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

2._ICS_6 GC-08-049-1-60

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

3._ICS_6 GC-08-049-1-60

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

4._ICS_6 GC-08-049-1-60

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

5._ICS_6 GC-08-049-1-60

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

6._ICS_6 GC-08-049-1-60

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

7._ICS_6

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 5

Dapeng Zhang, 2016

8._ICS_6

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 8

Dapeng Zhang, 2016

9._ICS_6

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 9

Dapeng Zhang, 2016

10._ICS_6

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 11

Dapeng Zhang, 2016

11._ICS_6

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 2 > FP

Dapeng Zhang, 2016

12._ICS_6 GC-08-049-1-60

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

13._ICS_6 GC-08-049-1-60

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._ICS_6

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 4

Dapeng Zhang, 2016

15._ICS_6

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8160 6

Dapeng Zhang, 2016

16._ICS_6 RUQ_721

79.5 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

17._ICS_6

75 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E281 T2

Dapeng Zhang, 2016

18._ICS_6 RUQ_721

73.1 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

19._ICS_6 RUQ_721

68.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

20._ICS_6 GC-08-49-1-60

55.7 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2

Notes: Brazil_Selections_Poss_grandparent

21._ICS_6 RUQ_721

47.1 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25