SNP Profiles of ICS 6   View Data

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 Key

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_Input profile
CTAGCGCTTTAACCGTCTCTAAAACTAA
1._GC-08-049-1-60
CTAGCGCTTTAACCGTCTCTAAAACTAA
2._ICS_6
CTAGCGCTTTAA_GTCTCTAAAACTAA
3._ICS_6
CTAGCGCTTTAACCGTCTCTAAAACTAA
4._ICS_6
CTAGCGCTTTAACCGTCTCTAAAACTAA
5._ICS_6
CTAGCGCTTTAACCGTCTCTAAAACTAA
6._ICS_6
CTAGCGCTTTAACCGTCTCTAAAACTAA
7._ICS_6
CTAGCGCTTTAACCGTCTCTAAAACTAA
8._GC-08-049-1-60
CTAGCGCTTTAACCGTCTCTAAAACTAA
9._ICS_6
CTAGCGCTTTAACCGTCTCTAAAACTAA
10._GC-08-049-1-60
CTAGCGCTTTAACCGTCTCTAAAACTAA
11._GC-08-049-1-60
CTAGCGCTTTAACCGTCTCTAAAACTAA
12._GC-08-049-1-60
CTAGCGCTTTAA_GTCTCTAAAACTAA
13._GC-08-049-1-60
CTAGCGCTTTAACCGTCTCTAAAACTAA
14._GC-08-049-1-60
CTAGCGCTTTAACCGTCTCTAAAACTAA
15._GC-08-049-1-60
CTAGCGCTTTAACCGTCTCTAAAACTAA
16._RUQ_721
_AGCGTTCTAACCTTCCCTAAAACCAA
17._RUQ_721
_AACGTT___TT____CCAA
18._GC-08-49-1-60
AGAGCCAGAAAAGGAA__AAAAAGAA
19._ICS_6
TTAAGGTTTTAACCTTCC_TTAACCAA
20._RUQ_721
AAAACCAAAAAAGGAA__AAAAGGAA
 1516171819202122232425262728
_Input profile
CTAAGGTTCCCGGTGGCTACCCGTCTCC
1._GC-08-049-1-60
CTAAGGTTCCCGGTGGCTACCCGTCTCC
2._ICS_6
CTAAGGTTCCCGGTGGCTACCCGTCTCC
3._ICS_6
CTAAGGTTCCCGGTGGCTACCCGTCTCC
4._ICS_6
CTAAGGTTCCCGGTGGCTACCCGTCTCC
5._ICS_6
CTAAGGTTCCCGGTGGCTACCCGTCTCC
6._ICS_6
CTAAGGTTCCCGGTGGCTACCCGTCTCC
7._ICS_6
CTAAGGTTCCCGGTGGCTACCCGTCTCC
8._GC-08-049-1-60
CTAAGGTTCCCGGTGGCTACCCGTCTCC
9._ICS_6
CTAAGGTTCCCGGTGGCTACCCGTCTCC
10._GC-08-049-1-60
CTAAGGTTCCCGGTGGCTACCCGTCTCC
11._GC-08-049-1-60
CTAAGGTTCCCGGTGGCTACCCGTCTCC
12._GC-08-049-1-60
CTAAGGTTCCCGGTGGCTACCCGTCTCC
13._GC-08-049-1-60
CTAAGGTTCCCGGTGGCTACCCGTCTCC
14._GC-08-049-1-60
CTAAGGTTCCCGGTGGCTACCCGTCTCC
15._GC-08-049-1-60
CTAAGGTTCCCGGTGGCTACCCGTCTCC
16._RUQ_721
CTAAGGTTCCCCGGAGCTACCCTTCTCC
17._RUQ_721
____CCCCGG_CTAACCTTCTCC
18._GC-08-49-1-60
AGAAGGAAGGCGAC_AGACCCAC_CC
19._ICS_6
CTAAGGTTCCCCGGAGCTACCCTTCTCC
20._RUQ_721
AGAAGGAAGGGGCC_AGACCCAA_CC
 293031323334353637383940  
_Input profile
AGGGATCTAGCGACCTGTACATGGX_XX_X
1._GC-08-049-1-60
AGGGATCTAGCGACCTGTACATGGX_XX_X
2._ICS_6
AGGGATCTAGCGACCTGTACATGGX_XX_X
3._ICS_6
AGGGATCTAGCGACCTGTACATGGX_XX_X
4._ICS_6
AGGGATCTAGCGACCTGTACATGGX_XX_X
5._ICS_6
AGGGATCTAGCGACCTGTACATGGX_XX_X
6._ICS_6
AGGGATCTAGCGACCTGTACATGGX_XX_X
7._ICS_6
AGGGATCT_CGACCTGTACATGGX_XX_X
8._GC-08-049-1-60
AGGGATCTAGCGACCTGTACATGGX_XX_X
9._ICS_6
AGGGATCTAGCGACCTGTACATGGX_XX_X
10._GC-08-049-1-60
AGGGATCTAGCGACCTGTACATGGX_XX_X
11._GC-08-049-1-60
AGGGATCTAGCGACCTGTACATGGX_XX_X
12._GC-08-049-1-60
AGGGATCTAGCGACCTGTACATGGX_XX_X
13._GC-08-049-1-60
AGGGATCTAGCGACCTGTACATGGX_XX_X
14._GC-08-049-1-60
AGGGATCT_CGACCTGTACATGGX_XX_X
15._GC-08-049-1-60
AGGGATCTAGCGACCTGTACATGGX_XX_X
16._RUQ_721
AAGGATCCGGCCAACCGTCCATGGX_XX_X
17._RUQ_721
AA_ATCCGGCCAACCGTCC__X_XX_X
18._GC-08-49-1-60
_GGATAGAGCGACAGACACATGGX_XX_X
19._ICS_6
AAGGATCCGG_AACCGTCCATGGX_XX_X
20._RUQ_721
_GGATGGGGGGAAGGACCCATGGX_XX_X

Input profile: ICS_6

 
Mars Center for Cocoa Science, Brazil
Location: 8160 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._ICS_6 GC-08-049-1-60

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

2._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 4
 Dapeng Zhang, 2016

3._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 2 > FP
 Dapeng Zhang, 2016

4._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 11
 Dapeng Zhang, 2016

5._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 9
 Dapeng Zhang, 2016

6._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 8
 Dapeng Zhang, 2016

7._ICS_6

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 6
 Dapeng Zhang, 2016

8._ICS_6 GC-08-049-1-60

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._ICS_6

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8160 5
 Dapeng Zhang, 2016

10._ICS_6 GC-08-049-1-60

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._ICS_6 GC-08-049-1-60

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

12._ICS_6 GC-08-049-1-60

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._ICS_6 GC-08-049-1-60

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._ICS_6 GC-08-049-1-60

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._ICS_6 GC-08-049-1-60

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._ICS_6 RUQ_721

61.5 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_6 RUQ_721

37.5 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._ICS_6 GC-08-49-1-60

54.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

19._ICS_6

53.9 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E281 T2
 Dapeng Zhang, 2016

20._ICS_6 RUQ_721

37.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25