SNP Profiles of ICS 40   View Data

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 Key

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_Input profile
CTAGCGCTTTAACCGTCTCTAAAACTAA
1._GC-01-106-6-03
CTAGCGCTTTAACC_CTCTAAAACTAA
2._ICS_40
CTAGCGCTTTAACCGTCTCTAAAACTAA
3._ICS_40
CTAGCGCTTTAACCGTCTCTAAAACTAA
4._ICS_40
CTAGCGCTTTAACCGTCTCTAAAACTAA
5._ICS_40
CTAGCGCTTTAACC_CTCTAAAACTAA
6._GC-01-106-6-03
CTAGCGCTTTAACCGTCTCTAAAACTAA
7._ICS_40
CTAGCGCTTTAACCGTCTCTAAAACTAA
8._ICS_40
CTAGCGCTTTAACCGTCTCTAAAACTAA
9._ICS_40
CTAGCGCTTTAACCGTCTCTAAAACTAA
10._GC-01-106-6-03
CTAGCGCTTTAACCGTCTCTAAAACTAA
11._GC-01-106-6-03
CTAGCGCTTTAACCGTCTCTAAAACTAA
12._GC-01-106-6-03
CTAGCGCTTTAACCGTCTCTAAAACTAA
13._GC-01-106-6-03
CTAGCGCTTTAACCGTCTCTAAAACTAA
14._GC-01-106-6-03
CTAGCGCTTTAACCGTCTCTAAAACTAA
15._GC-01-106-6-03
CTAGCGCTTTAACCGTCTCTAAAACTAA
16._RUQ_1432
CTAGCGCTCTAACCGTCTCTAAAACTAA
17._RUQ_1432
_AGCGCT___GT____CTAA
18._ICS_40
CTAGGGCTTTAACCGTCTCTAAAACTAA
19._ICS_40
__GGCTTTAA_GTCTCTAAAACTAA
20._RUQ_1432
AGAGCCAGAAAAGGAA__AAAAAGAA
21._ICS_40
CCGGGGTTCTACCTGTCCCCAAGGCCAA
22._GC-01-106-6-03
CCGGCCTTCTACCTGGTTCCAAGGCCAA
23._ICS_40
CCGGCCTTCTACCTGGTTCCAAGGCCAA
 1516171819202122232425262728
_Input profile
CTAAGGTTCCCGGTGGCTACCCGTCTCC
1._GC-01-106-6-03
CTAAGGTTCCCGGTGGCTACCCGTCTCC
2._ICS_40
CTAAGGTTCCCGGTGGCTACCCGTCTCC
3._ICS_40
CTAAGGTTCCCGGTGGCTACCCGTCTCC
4._ICS_40
_AAGGTTCCCGGTGGCTACCCGTCTCC
5._ICS_40
CTAAGGTTCCCGGTGGCTACCCGTCTCC
6._GC-01-106-6-03
CTAAGGTTCCCGGTGGCTACCCGTCTCC
7._ICS_40
CTAAGGTTCCCGGTGGCTACCCGTCTCC
8._ICS_40
CTAAGGTTCCCGGTGGCTACCCGTCTCC
9._ICS_40
CTAAGGTTCCCGGTGGCTACCCGTCTCC
10._GC-01-106-6-03
CTAAGGTTCCCGGTGGCTACCCGTCTCC
11._GC-01-106-6-03
_AAGGTTCCCGGTGGCTACCCGTCTCC
12._GC-01-106-6-03
CTAAGGTTCCCGGTGGCTACCCGTCTCC
13._GC-01-106-6-03
CTAAGGTTCCCGGTGGCTACCCGTCTCC
14._GC-01-106-6-03
CTAAGGTTCCCGGTGGCTACCCGTCTCC
15._GC-01-106-6-03
CTAAGGTTCCCGGTGGCTACCCGTCTCC
16._RUQ_1432
CTAAGGTTCCCGGTAGCTACCCGTCTCC
17._RUQ_1432
____CCCGGT_CTAACCGTCTCC
18._ICS_40
CTAAGGTTCCCGGTAGCTACCCGTCTCC
19._ICS_40
CTAAGGTTCCCGGTAGCT_CCGTCTCC
20._RUQ_1432
AGAAGGAAGGCGAC_AGACCCAC_CC
21._ICS_40
CTAACGCTCCCGGGAACTCCCCTTCTAC
22._GC-01-106-6-03
CTATGGCTTTCCGTAATTCCGGGGCCAA
23._ICS_40
CTATGGCTTTCCGTAATTCCGGGGCCAA
 293031323334353637383940  
_Input profile
AGGGATCTAGCGACCTGTACATGGX_XX_X
1._GC-01-106-6-03
AGGGATCTAGCGACCTGTACATGGX_XX_X
2._ICS_40
AGGGATCTAGCGACCTGTACATGGX_XX_X
3._ICS_40
AGGGATCTAGCG_CTGTACATGGX_XX_X
4._ICS_40
AGGGATCTAGCGACCTGTACATGGX_XX_X
5._ICS_40
AGGGATCTAGCGACCTGTACATGGX_XX_X
6._GC-01-106-6-03
AGGGATCTAGCGACCTGTACATGGX_XX_X
7._ICS_40
AGGGATCTAGCGACCTGTACATGGX_XX_X
8._ICS_40
AGGGATCTAGCGACCTGTACATGGX_XX_X
9._ICS_40
AGGGATCTAGCGACCTGTACATGGX_XX_X
10._GC-01-106-6-03
AGGGATCTAGCGACCTGTACATGGX_XX_X
11._GC-01-106-6-03
AGGGATCTAGCGACCTGTACATGGX_XX_X
12._GC-01-106-6-03
AGGGATCTAGCG_CTGTACATGGX_XX_X
13._GC-01-106-6-03
AGGGATCTAGCGACCTGTACATGGX_XX_X
14._GC-01-106-6-03
AGGGATCTAGCGACCTGTACATGGX_XX_X
15._GC-01-106-6-03
AGGGATCTAGCGACCTGTACATGGX_XX_X
16._RUQ_1432
AGGGATCTAGCGACCTGTACATGGX_XX_X
17._RUQ_1432
AG_ATCTAGCGACCTGTAC__X_XX_X
18._ICS_40
AGGGATCTAGCGACCTGTACATGGX_XX_X
19._ICS_40
AGGG_CTAG_AC_GTACATGGX_XX_X
20._RUQ_1432
_GGATAGAGCGACAGACACATGGX_XX_X
21._ICS_40
AAAGAATTAAGGACCCGTCCTTCGX_XX_X
22._GC-01-106-6-03
AGAAATCCAGCCCCTTGGACATGGX_XX_X
23._ICS_40
AGAAATCCAGCCCCTTGGACATGGX_XX_X

Input profile: ICS_40

 
Mars Center for Cocoa Science, Brazil
Location: 1603 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._ICS_40 GC-01-106-6-03

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

2._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 4
 Dapeng Zhang, 2016

3._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 6 > FP
 Dapeng Zhang, 2016

4._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 4 > FP
 Dapeng Zhang, 2016

5._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 16
 Dapeng Zhang, 2016

6._ICS_40 GC-01-106-6-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 11
 Dapeng Zhang, 2016

8._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 6
 Dapeng Zhang, 2016

9._ICS_40

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 13
 Dapeng Zhang, 2016

10._ICS_40 GC-01-106-6-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

11._ICS_40 GC-01-106-6-03

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 3, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

12._ICS_40 GC-01-106-6-03

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 3, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

13._ICS_40 GC-01-106-6-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._ICS_40 GC-01-106-6-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

15._ICS_40 GC-01-106-6-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

16._ICS_40 RUQ_1432

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_40 RUQ_1432

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._ICS_40

96.3 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0201 2A
 Dapeng Zhang, 2016

19._ICS_40

95.5 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block2
 Dapeng Zhang, 2016

20._ICS_40 RUQ_1432

54.3 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

21._ICS_40

40 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E287 T4
 Dapeng Zhang, 2016

22._ICS_40 GC-01-106-6-03

33.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._ICS_40

33.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 9
 Dapeng Zhang, 2016

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25