SNP Profiles of ICS%2039 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
1._GC-01-085-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
2._ICS_39	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
3._ICS_39	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
4._ICS_39	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
5._ICS_39	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
6._ICS_39	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
7._GC-01-085-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
8._GC-01-085-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
9._GC-01-85-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
10._GC-01-85-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
11._GC-01-85-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
12._ICS_39	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
13._GC-01-85-5-02	CT	AG	CG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
14._ICS_39	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
15._ICS_39	CT	AG	GG	CT	TT	AA	CC	GT	CT	CT	AA	AA	CT	AA
16._RUQ_1089	CC	AG	CC	TT	TT	AC	TT	TT	CC	CC	AA	AG	CT	AG
17._ICS_39_Fld#_30_Plt#_2	AG	AG	CC	AG	AA	AA	GG	AA	_	_	AA	AA	AG	AA
18._RUQ_1089	_	_	CC	_	_	_	_	TT	_	CC	_	AG	_	AG
19._RUQ_1089	GG	AA	GG	AA	AA	_	AA	AA	_	_	AA	AG	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
1._GC-01-085-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
2._ICS_39	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
3._ICS_39	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
4._ICS_39	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
5._ICS_39	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
6._ICS_39	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
7._GC-01-085-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
8._GC-01-085-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
9._GC-01-85-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
10._GC-01-85-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
11._GC-01-85-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
12._ICS_39	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
13._GC-01-85-5-02	CT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	GT	CT	CC
14._ICS_39	CT	AA	GG	TT	CC	CG	GT	AG	CT	AC	CC	GT	CT	CC
15._ICS_39	CT	AA	GG	TT	CC	CG	GT	AG	CT	AC	CC	GT	CT	CC
16._RUQ_1089	TT	AT	GG	CT	CC	CC	GG	AA	CC	AA	GG	GT	CC	CC
17._ICS_39_Fld#_30_Plt#_2	AG	AA	GG	AA	GG	CG	AA	_	AG	AC	CG	AC	_	CC
18._RUQ_1089	_	_	_	_	_	CC	GG	AA	_	AA	GG	_	_	CC
19._RUQ_1089	AA	AT	GG	AG	GG	GG	CC	_	GG	AA	GG	AC	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
1._GC-01-085-5-02	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
2._ICS_39	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
3._ICS_39	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
4._ICS_39	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
5._ICS_39	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
6._ICS_39	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
7._GC-01-085-5-02	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
8._GC-01-085-5-02	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
9._GC-01-85-5-02	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
10._GC-01-85-5-02	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
11._GC-01-85-5-02	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
12._ICS_39	AG	GG	AT	CT	AG	CG	_	CT	GT	AC	AT	GG	X_X	X_X
13._GC-01-85-5-02	AG	GG	AT	CT	AG	CG	_	CT	GT	AC	AT	GG	X_X	X_X
14._ICS_39	AG	GG	AT	CT	AG	CG	AC	CT	GT	AC	AT	GG	X_X	X_X
15._ICS_39	AG	AG	AT	CT	AG	GG	AC	CT	GT	AC	AT	GG	X_X	X_X
16._RUQ_1089	AA	GG	AT	CT	AG	CC	AC	CT	GG	AC	TT	GG	X_X	X_X
17._ICS_39_Fld#_30_Plt#_2	_	GG	AT	AG	AG	CG	AC	AG	AC	AC	AT	GG	X_X	X_X
18._RUQ_1089	_	_	_	_	AG	_	_	_	_	AC	_	_	X_X	X_X
19._RUQ_1089	_	GG	AT	AG	AG	GG	AC	AG	CC	AC	TT	GG	X_X	X_X

Input profile: ICS_39

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Mars Center for Cocoa Science, Brazil

Location: 1502 9

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._ICS_39 GC-01-085-5-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

2._ICS_39

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL5 FP

Dapeng Zhang, 2016

3._ICS_39

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL15 F

Dapeng Zhang, 2016

4._ICS_39

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL14 F

Dapeng Zhang, 2016

5._ICS_39

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 16

Dapeng Zhang, 2016

6._ICS_39

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 12

Dapeng Zhang, 2016

7._ICS_39 GC-01-085-5-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

8._ICS_39 GC-01-085-5-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

9._ICS_39 GC-01-85-5-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL15

Notes: PL15 FP4

10._ICS_39 GC-01-85-5-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL5

Notes: PL5 FP2

11._ICS_39 GC-01-85-5-02

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL14

Notes: PL14 FP3

12._ICS_39

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL8 FP

Dapeng Zhang, 2016

13._ICS_39 GC-01-85-5-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL8

Notes: PL8 FP1

14._ICS_39

97.5 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Row 9 C0200 2A

Dapeng Zhang, 2016

15._ICS_39

95 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E361 T3

Dapeng Zhang, 2016

16._ICS_39 RUQ_1089

66.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

17._ICS_39 ICS_39_Fld#_30_Plt#_2

54.3 %
35 shared markers

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USDA-TARS, United States of America

Location: Field: 30, Tree: 2

18._ICS_39 RUQ_1089

53.8 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

19._ICS_39 RUQ_1089

39.7 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25