SNP Profiles of ICS 39   View Data

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 Key

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_Input profile
CTAGCGCTTTAACCGTCTCTAAAACTAA
1._GC-01-085-5-02
CTAGCGCTTTAACCGTCTCTAAAACTAA
2._ICS_39
CTAGCGCTTTAACCGTCTCTAAAACTAA
3._ICS_39
CTAGCGCTTTAACCGTCTCTAAAACTAA
4._ICS_39
CTAGCGCTTTAACCGTCTCTAAAACTAA
5._ICS_39
CTAGCGCTTTAACCGTCTCTAAAACTAA
6._GC-01-085-5-02
CTAGCGCTTTAACCGTCTCTAAAACTAA
7._ICS_39
CTAGCGCTTTAACCGTCTCTAAAACTAA
8._ICS_39
CTAGCGCTTTAACCGTCTCTAAAACTAA
9._GC-01-85-5-02
CTAGCGCTTTAACCGTCTCTAAAACTAA
10._GC-01-85-5-02
CTAGCGCTTTAACCGTCTCTAAAACTAA
11._GC-01-85-5-02
CTAGCGCTTTAACCGTCTCTAAAACTAA
12._GC-01-85-5-02
CTAGCGCTTTAACCGTCTCTAAAACTAA
13._GC-01-085-5-02
CTAGCGCTTTAACCGTCTCTAAAACTAA
14._ICS_39
CTAGGGCTTTAACCGTCTCTAAAACTAA
15._ICS_39
CTAGGGCTTTAACCGTCTCTAAAACTAA
16._ICS_39_Fld#_30_Plt#_2
AGAGCCAGAAAAGGAA__AAAAAGAA
17._RUQ_1089
CCAGCCTTTTACTTTTCCCCAAAGCTAG
18._RUQ_1089
GGAAGGAAAA_AAAA__AAAGAGAG
 1516171819202122232425262728
_Input profile
CTAAGGTTCCCGGTGGCTACCCGTCTCC
1._GC-01-085-5-02
CTAAGGTTCCCGGTGGCTACCCGTCTCC
2._ICS_39
CTAAGGTTCCCGGTGGCTACCCGTCTCC
3._ICS_39
CTAAGGTTCCCGGTGGCTACCCGTCTCC
4._ICS_39
CTAAGGTTCCCGGTGGCTACCCGTCTCC
5._ICS_39
CTAAGGTTCCCGGTGGCTACCCGTCTCC
6._GC-01-085-5-02
CTAAGGTTCCCGGTGGCTACCCGTCTCC
7._ICS_39
CTAAGGTTCCCGGTGGCTACCCGTCTCC
8._ICS_39
CTAAGGTTCCCGGTGGCTACCCGTCTCC
9._GC-01-85-5-02
CTAAGGTTCCCGGTGGCTACCCGTCTCC
10._GC-01-85-5-02
CTAAGGTTCCCGGTGGCTACCCGTCTCC
11._GC-01-85-5-02
CTAAGGTTCCCGGTGGCTACCCGTCTCC
12._GC-01-85-5-02
CTAAGGTTCCCGGTGGCTACCCGTCTCC
13._GC-01-085-5-02
CTAAGGTTCCCGGTGGCTACCCGTCTCC
14._ICS_39
CTAAGGTTCCCGGTAGCTACCCGTCTCC
15._ICS_39
CTAAGGTTCCCGGTAGCTACCCGTCTCC
16._ICS_39_Fld#_30_Plt#_2
AGAAGGAAGGCGAA_AGACCGAC_CC
17._RUQ_1089
TTATGGCTCCCCGGAACCAAGGGTCCCC
18._RUQ_1089
AAATGGAGGGGGCC_GGAAGGAC_CC
 293031323334353637383940  
_Input profile
AGGGATCTAGCGACCTGTACATGGX_XX_X
1._GC-01-085-5-02
AGGGATCTAGCGACCTGTACATGGX_XX_X
2._ICS_39
AGGGATCTAGCGACCTGTACATGGX_XX_X
3._ICS_39
AGGGATCTAGCG_CTGTACATGGX_XX_X
4._ICS_39
AGGGATCTAGCGACCTGTACATGGX_XX_X
5._ICS_39
AGGGATCTAGCGACCTGTACATGGX_XX_X
6._GC-01-085-5-02
AGGGATCTAGCGACCTGTACATGGX_XX_X
7._ICS_39
AGGGATCTAGCGACCTGTACATGGX_XX_X
8._ICS_39
AGGGATCTAGCGACCTGTACATGGX_XX_X
9._GC-01-85-5-02
AGGGATCTAGCGACCTGTACATGGX_XX_X
10._GC-01-85-5-02
AGGGATCTAGCG_CTGTACATGGX_XX_X
11._GC-01-85-5-02
AGGGATCTAGCGACCTGTACATGGX_XX_X
12._GC-01-85-5-02
AGGGATCTAGCGACCTGTACATGGX_XX_X
13._GC-01-085-5-02
AGGGATCTAGCGACCTGTACATGGX_XX_X
14._ICS_39
AGGGATCTAGCGACCTGTACATGGX_XX_X
15._ICS_39
AGAGATCTAGGGACCTGTACATGGX_XX_X
16._ICS_39_Fld#_30_Plt#_2
_GGATAGAGCGACAGACACATGGX_XX_X
17._RUQ_1089
AAGGATCTAGCCACCTGGACTTGGX_XX_X
18._RUQ_1089
_GGATAGAGGGACAGCCACTTGGX_XX_X

Input profile: ICS_39

 
Mars Center for Cocoa Science, Brazil
Location: 1502 9
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._ICS_39 GC-01-085-5-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

2._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 16
 Dapeng Zhang, 2016

3._ICS_39

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL8 FP
 Dapeng Zhang, 2016

4._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL5 FP
 Dapeng Zhang, 2016

5._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL15 F
 Dapeng Zhang, 2016

6._ICS_39 GC-01-085-5-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL14 F
 Dapeng Zhang, 2016

8._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 12
 Dapeng Zhang, 2016

9._ICS_39 GC-01-85-5-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL5
Notes: PL5 FP2
 Mars, 2018

10._ICS_39 GC-01-85-5-02

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL8
Notes: PL8 FP1
 Mars, 2018

11._ICS_39 GC-01-85-5-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

12._ICS_39 GC-01-85-5-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL15
Notes: PL15 FP4
 Mars, 2018

13._ICS_39 GC-01-085-5-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._ICS_39

96.3 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 9 C0200 2A
 Dapeng Zhang, 2016

15._ICS_39

92.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E361 T3
 Dapeng Zhang, 2016

16._ICS_39 ICS_39_Fld#_30_Plt#_2

52.9 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 30, Tree: 2
 Mars, 2018

17._ICS_39 RUQ_1089

46.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._ICS_39 RUQ_1089

30.9 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25