SNP Profiles of ICS 1   View Data

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 Key

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_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
3._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
4._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
5._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
6._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
7._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
8._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
9._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
10._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
11._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
12._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
13._RUQ_847
TTAGGGCTTTAACCTTCTTTAAAATTAG
14._RUQ_847
_AAGGCT___TT____TTAG
15._RUQ_847
__CC_________TT_
16._RUQ_847
TTAGGGCTTTAACCTTCTCTAAAATTAG
17._ICS1
__CG_________CC_
18._RUQ_847
AAAACCAGAAAAGGAA__AAAAAAAG
19._MITC-000297
AAAACCAGAAAAGGAA__AAAAAAAG
20._ICS_1_Fld#_73_Plt#_2
AAAACCAGAAAAGGAA__AAAAAAAG
21._ICS_1
CTGGGGCTTTACTTTTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
TTAAGGTTCCCGGTGGTTACCCTTTTCC
1._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
2._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
3._ICS_1
TTAAGGTTCC_GTGGTTACCCTTTTCC
4._NA
TTAAGGTTCCCGGTGGTTAC_TTTTCC
5._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
6._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
7._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
8._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
9._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
10._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
11._ICS_1
TTAAGGTTCCCGGTGGTTAC_TTTTCC
12._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
13._RUQ_847
TTAAGGTTCCCGGTGGTTACCCTTTTCC
14._RUQ_847
____CCCGGT_TTAACCTTTTCC
15._RUQ_847
TT___CCCG___ACCC___
16._RUQ_847
TTAAGGTTCCCGGTGGCTACCCTTCTCC
17._ICS1
CT___CTCG___CCCC___
18._RUQ_847
AAAAGGAAGGCGAC_AAACCCAA_CC
19._MITC-000297
AAAAGGAAGGCGAC_AAACCCAA_CC
20._ICS_1_Fld#_73_Plt#_2
AAAAGGAAGGCGAC_AAACCCAA_CC
21._ICS_1
TTAACGTTCCGGGGAATTCCCGGGCTAA
 293031323334353637383940  
_Input profile
AGGGATCTAGCGAACCGTAAATGGX_XX_X
1._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
2._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
3._ICS_1
_GGATCTAGCGAACCGTAAATGGX_XX_X
4._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
5._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
6._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
7._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
8._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
9._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
10._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
11._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
12._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
13._RUQ_847
AGGGATCTAGCGAACCGTAAATGGX_XX_X
14._RUQ_847
AG_ATCTAGCGAACCGTAA__X_XX_X
15._RUQ_847
__AT_AGCGAACC_AA__X_XX_X
16._RUQ_847
AGGGATCTAGCGAACCGTAAATGGX_XX_X
17._ICS1
__TT_AGCGACCT_CC__X_XX_X
18._RUQ_847
_GGATAGAGCGAAGGACAAATGGX_XX_X
19._MITC-000297
_GGATAGAGCGAAGGACAAATGGX_XX_X
20._ICS_1_Fld#_73_Plt#_2
_GGATAGAGCGAAGGACAAATGGX_XX_X
21._ICS_1
AGGGAACCAACCAACCGTACATGGX_XX_X

Input profile: ICS_1

 
Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

1._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._ICS_1

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

4._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

9._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

10._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

11._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

12._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._ICS_1 RUQ_847

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._ICS_1 RUQ_847

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._ICS_1 RUQ_847

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

16._ICS_1 RUQ_847

95 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_1 ICS1

50 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

18._ICS_1 RUQ_847

54.3 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

19._ICS_1 MITC-000297

54.3 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

20._ICS_1 ICS_1_Fld#_73_Plt#_2

54.3 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

21._ICS_1

52.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25