SNP Profiles of ICS 1   View Data

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 Key

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_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
3._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
4._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
5._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
6._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
7._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
8._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
9._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
10._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
11._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
12._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
13._RUQ_847
TTAGGGCTTTAACCTTCTTTAAAATTAG
14._RUQ_847
_AAGGCT___TT____TTAG
15._RUQ_847
__CC_________TT_
16._RUQ_847
TTAGGGCTTTAACCTTCTCTAAAATTAG
17._ICS1
__CG_________CC_
18._RUQ_847
AAAACCAGAAAAGGAA__AAAAAAAG
19._MITC-000297
AAAACCAGAAAAGGAA__AAAAAAAG
20._ICS_1_Fld#_73_Plt#_2
AAAACCAGAAAAGGAA__AAAAAAAG
21._ICS_1
CTGGGGCTTTACTTTTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
TTAAGGTTCCCGGTGGTTACTTTTCCAG
1._NA
TTAAGGTTCCCGGTGGTTACTTTTCCAG
2._ICS_1
TTAAGGTTCCCGGTGGTTACTTTTCCAG
3._ICS_1
TTAAGGTTCC_GTGGTTACTTTTCC_
4._NA
TTAAGGTTCCCGGTGGTTACTTTTCCAG
5._NA
TTAAGGTTCCCGGTGGTTACTTTTCCAG
6._NA
TTAAGGTTCCCGGTGGTTACTTTTCCAG
7._NA
TTAAGGTTCCCGGTGGTTACTTTTCCAG
8._ICS_1
TTAAGGTTCCCGGTGGTTACTTTTCCAG
9._ICS_1
TTAAGGTTCCCGGTGGTTACTTTTCCAG
10._ICS_1
TTAAGGTTCCCGGTGGTTACTTTTCCAG
11._ICS_1
TTAAGGTTCCCGGTGGTTACTTTTCCAG
12._NA
TTAAGGTTCCCGGTGGTTACTTTTCCAG
13._RUQ_847
TTAAGGTTCCCGGTGGTTACTTTTCCAG
14._RUQ_847
____CCCGGT_TTAATTTTCCAG
15._RUQ_847
TT___CCCG___AC____
16._RUQ_847
TTAAGGTTCCCGGTGGCTACTTCTCCAG
17._ICS1
CT___CTCG___CC____
18._RUQ_847
AAAAGGAAGGCGAC_AAACAA_CC_
19._MITC-000297
AAAAGGAAGGCGAC_AAACAA_CC_
20._ICS_1_Fld#_73_Plt#_2
AAAAGGAAGGCGAC_AAACAA_CC_
21._ICS_1
TTAACGTTCCGGGGAATTCCGGCTAAAG
 2930313233343536373839   
_Input profile
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
1._NA
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
2._ICS_1
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
3._ICS_1
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
4._NA
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
5._NA
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
6._NA
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
7._NA
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
8._ICS_1
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
9._ICS_1
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
10._ICS_1
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
11._ICS_1
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
12._NA
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
13._RUQ_847
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
14._RUQ_847
_ATCTAGCGAACCGTAA__X_XX_XX_X
15._RUQ_847
_AT_AGCGAACC_AA__X_XX_XX_X
16._RUQ_847
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
17._ICS1
_TT_AGCGACCT_CC__X_XX_XX_X
18._RUQ_847
GGATAGAGCGAAGGACAAATGGX_XX_XX_X
19._MITC-000297
GGATAGAGCGAAGGACAAATGGX_XX_XX_X
20._ICS_1_Fld#_73_Plt#_2
GGATAGAGCGAAGGACAAATGGX_XX_XX_X
21._ICS_1
GGAACCAACCAACCGTACATGGX_XX_XX_X

Input profile: ICS_1

 
Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

1._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._ICS_1

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

4._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

9._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

10._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

11._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

12._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._ICS_1 RUQ_847

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._ICS_1 RUQ_847

95.7 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._ICS_1 RUQ_847

91.7 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

16._ICS_1 RUQ_847

94.9 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_1 ICS1

45.8 %
12 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

18._ICS_1 RUQ_847

52.9 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

19._ICS_1 MITC-000297

52.9 %
34 shared markers

USDA-SHRS, United States of America
 Mars, 2018

20._ICS_1 ICS_1_Fld#_73_Plt#_2

52.9 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

21._ICS_1

52.6 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25