SNP Profiles of ICS 1   View Data

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 Key

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_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
3._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
4._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
5._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
6._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
7._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
8._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
9._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
10._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
11._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
12._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
13._RUQ_847
TTAGGGCTTTAACCTTCTTTAAAATTAG
14._RUQ_847
_AAGGCT___TT____TTAG
15._RUQ_847
__CC_________TT_
16._RUQ_847
TTAGGGCTTTAACCTTCTCTAAAATTAG
17._ICS1
__CG_________CC_
18._RUQ_847
AAAACCAGAAAAGGAA__AAAAAAAG
19._MITC-000297
AAAACCAGAAAAGGAA__AAAAAAAG
20._ICS_1_Fld#_73_Plt#_2
AAAACCAGAAAAGGAA__AAAAAAAG
21._ICS_1
CTGGGGCTTTACTTTTCCCCAAGGCCAG
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_Input profile
TTAAGGTTCCGTGGTTACCCTTTTCCGG
1._ICS_1
TTAAGGTTCCGTGGTTACCCTTTTCCGG
2._ICS_1
TTAAGGTTCCGTGGTTACCCTTTTCCGG
3._ICS_1
TTAAGGTTCCGTGGTTACCCTTTTCCGG
4._NA
TTAAGGTTCCGTGGTTACCCTTTTCCGG
5._ICS_1
TTAAGGTTCCGTGGTTACCCTTTTCCGG
6._ICS_1
TTAAGGTTCCGTGGTTACCCTTTTCCGG
7._ICS_1
TTAAGGTTCCGTGGTTAC_TTTTCCGG
8._NA
TTAAGGTTCCGTGGTTACCCTTTTCCGG
9._NA
TTAAGGTTCCGTGGTTACCCTTTTCCGG
10._NA
TTAAGGTTCCGTGGTTACCCTTTTCCGG
11._NA
TTAAGGTTCCGTGGTTACCCTTTTCCGG
12._NA
TTAAGGTTCCGTGGTTAC_TTTTCCGG
13._RUQ_847
TTAAGGTTCCGTGGTTACCCTTTTCCGG
14._RUQ_847
____CCGT_TTAACCTTTTCC_
15._RUQ_847
TT___CC___ACCC____
16._RUQ_847
TTAAGGTTCCGTGGCTACCCTTCTCCGG
17._ICS1
CT___CT___CCCC____
18._RUQ_847
AAAAGGAAGGAC_AAACCCAA_CCGG
19._MITC-000297
AAAAGGAAGGAC_AAACCCAA_CCGG
20._ICS_1_Fld#_73_Plt#_2
AAAAGGAAGGAC_AAACCCAA_CCGG
21._ICS_1
TTAACGTTCCGGAATTCCCGGGCTAAGG
 29303132333435363738    
_Input profile
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
1._ICS_1
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
2._ICS_1
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
3._ICS_1
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
4._NA
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
5._ICS_1
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
6._ICS_1
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
7._ICS_1
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
8._NA
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
9._NA
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
10._NA
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
11._NA
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
12._NA
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
13._RUQ_847
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
14._RUQ_847
ATCTAGCGAACCGTAA__X_XX_XX_XX_X
15._RUQ_847
AT_AGCGAACC_AA__X_XX_XX_XX_X
16._RUQ_847
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
17._ICS1
TT_AGCGACCT_CC__X_XX_XX_XX_X
18._RUQ_847
ATAGAGCGAAGGACAAATGGX_XX_XX_XX_X
19._MITC-000297
ATAGAGCGAAGGACAAATGGX_XX_XX_XX_X
20._ICS_1_Fld#_73_Plt#_2
ATAGAGCGAAGGACAAATGGX_XX_XX_XX_X
21._ICS_1
AACCAACCAACCGTACATGGX_XX_XX_XX_X

Input profile: ICS_1

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

1._ICS_1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._ICS_1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

3._ICS_1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

4._ICS_1 NA

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._ICS_1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

6._ICS_1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

7._ICS_1

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

8._ICS_1 NA

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._ICS_1 NA

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._ICS_1 NA

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._ICS_1 NA

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._ICS_1 NA

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._ICS_1 RUQ_847

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._ICS_1 RUQ_847

95.5 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._ICS_1 RUQ_847

91.7 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

16._ICS_1 RUQ_847

94.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_1 ICS1

45.8 %
12 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

18._ICS_1 RUQ_847

52.9 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

19._ICS_1 MITC-000297

52.9 %
34 shared markers

USDA-SHRS, United States of America
 Mars, 2018

20._ICS_1 ICS_1_Fld#_73_Plt#_2

52.9 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

21._ICS_1

52.6 %
38 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25