SNP Profiles of GU 221/C   View Data

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 Key

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_Input profile
CCAGGGCCTTTTTTCCCCAAGGCCAATT
1._RUQ_200
_AGGGCC__TT____CCAA_
2._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
3._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
4._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
5._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
6._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
7._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
8._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
9._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
10._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
11._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
12._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
13._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
14._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
15._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
16._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
17._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
18._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
19._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
20._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
21._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
22._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
23._GC-01-075-4-11
CCAGGGCCTTTTTTCCCCAAGGCCAATT
24._GU_221_/C
CCAGGGCCTTTTTTCCCCAAGGCCAATT
25._RUQ_200
CCAGGGCCTTTTTTCCCCAAGGCCAATT
26._GU_221_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
27._GU_221_/C
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
28._GC-01-075-4-11
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
29._GC-01-075-4-11
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
30._GC-01-75-4-11
GGAGCCGGAAAAAA__AAGGGGAAAA
31._RUQ_200
GGAGCCGGAAAAAA__AAGGGGAAAA
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGAGCCACCCGGCCAAAG
1._RUQ_200
___CCGGGG_CCACCCGGCCAAAG
2._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
3._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
4._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
5._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
6._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
7._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
8._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
9._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
10._GU_221_/C
AAGGCCCCGGGGAG_ACCCGGCCAAAG
11._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
12._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
13._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
14._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
15._GC-01-075-4-11
AAGGCCCCGGGGAG_ACCCGGCCAAAG
16._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
17._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
18._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
19._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
20._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
21._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
22._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
23._GC-01-075-4-11
AAGGCCCCGGGGAGCCACCCGGCCAAAG
24._GU_221_/C
AAGGCCCCGGGGAGCCACCCGGCCAAAG
25._RUQ_200
AAGGCCCCGGGGAACCACCCGGCCAAAG
26._GU_221_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
27._GU_221_/C
AAGGCCCCGGGGAACCCCCCGGCCAAGG
28._GC-01-075-4-11
AAGGCCCCGGGGAACCCCCCGGCCAAGG
29._GC-01-075-4-11
AAGGCCCCGGGGAACCCCCCGGCCAAGG
30._GC-01-75-4-11
AAGGGGGGCCCC_GGACCCCC_AA_
31._RUQ_200
AAGGGGGGCCCC_GGACCCCC_AA_
 2930313233343536373839   
_Input profile
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
1._RUQ_200
_AACCGGCCAATTTTAA__X_XX_XX_X
2._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
3._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
4._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
5._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
6._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
7._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
8._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
9._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
10._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
11._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
12._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
13._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
14._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
15._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
16._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
17._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
18._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
19._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
20._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
21._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
22._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
23._GC-01-075-4-11
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
24._GU_221_/C
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
25._RUQ_200
AGAACCGGCCAATTTTAAATGGX_XX_XX_X
26._GU_221_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
27._GU_221_/C
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
28._GC-01-075-4-11
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
29._GC-01-075-4-11
GGAACCGGCCAATTTTAAAAGGX_XX_XX_X
30._GC-01-75-4-11
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X
31._RUQ_200
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_221_/C

 
Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

1._GU_221_/C RUQ_200

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

3._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

4._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

5._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

6._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

7._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

8._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

9._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

10._GU_221_/C

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

11._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

13._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

15._GU_221_/C GC-01-075-4-11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

21._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

22._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

23._GU_221_/C GC-01-075-4-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._GU_221_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

25._GU_221_/C RUQ_200

96.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

26._GU_221_/C

79.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

27._GU_221_/C

79.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

28._GU_221_/C GC-01-075-4-11

79.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._GU_221_/C GC-01-075-4-11

79.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._GU_221_/C GC-01-75-4-11

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._GU_221_/C RUQ_200

47.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25