SNP Profiles of GU%20221%20/C   View Data

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 Key

 1234567891011121314
_Input profile
CCAGGGCCTTCCTTTTCCCCAAGGCCAA
1._RUQ_200
_AGGGCC___TT____CCAA
2._RUQ_200
__GG____TT_CC_GG_AA
3._GC-01-075-4-11
CCAGGGCCTT_TTTTCCCCAAGGCCAA
4._GC-01-075-4-11
CCAGGGCCTT_TTTTCCCCAAGGCCAA
5._GC-01-075-4-11
CCAGGGCCTT_TTTTCCCCAAGGCCAA
6._GC-01-075-4-11
CCAGGGCCTT_TTTTCCCCAAGGCCAA
7._GC-01-075-4-11
CCAGGGCCTT_TTTTCCCCAAGGCCAA
8._GC-01-075-4-11
CCAGGGCCTT_TTTTCCCCAAGGCCAA
9._GC-01-075-4-11
CCAGGGCCTT_TTTTCCCCAAGGCCAA
10._GC-01-075-4-11
CCAGGGCCTT_TTTTCCCCAAGGCCAA
11._GC-01-075-4-11
CCAGGGCCTT_TTTTCCCCAAGGCCAA
12._GC-01-075-4-11
CCAGGGCCTT_TTTTCCCCAAGGCCAA
13._GC-01-075-4-11
CCAGGGCCTT_TTTTCCCCAAGGCCAA
14._GU_221_/C
CCAGGGCCTT_TTTTCCCCAAGGCCAA
15._GU_221_/C
CCAGGGCCTT_TTTTCCCCAAGGCCAA
16._GU_221_/C
CCAGGGCCTT_TTTTCCCCAAGGCCAA
17._GU_221_/C
CCAGGGCCTT_TTTTCCCCAAGGCCAA
18._GU_221_/C
CCAGGGCCTT_TTTTCCCCAAGGCCAA
19._GU_221_/C
CCAGGGCCTT_TTTTCCCCAAGGCCAA
20._GU_221_/C
CCAGGGCCTT_TTTTCCCCAAGGCCAA
21._GU_221_/C
CCAGGGCCTT_TTTTCCCCAAGGCCAA
22._GU_221_/C
CCAGGGCCTT_TTTTCCCCAAGGCCAA
23._GU_221_/C
CCAGGGCCTT_TTTTCCCCAAGGCCAA
24._GU_221_/C
CCAGGGCCTT_TTTTCCCCAAGGCCAA
25._GC-01-075-4-11
CCAGGGCCTT_TTTTCCCCAAGGCCAA
26._GU_221_/C
CCAGGGCCTT_TTTTCCCCAAGGCCAA
27._GU_221_/C
CCGGCCCCTT_TTTTCCCCAAGGCCGG
28._GC-01-075-4-11
CCGGCCCCTT_TTTTCCCCAAGGCCGG
29._GC-01-075-4-11
CCGGCCCCTT_TTTTCCCCAAGGCCGG
30._GU_221_/C
CCGGCCCCTT_TTTTCCCCAAGGCCGG
31._GC-01-75-4-11
GGAGCCGGAACCAAAA__AAGGGGAA
32._RUQ_200
GGAGCCGGAACCAAAA__AAGGGGAA
 1516171819202122232425262728
_Input profile
TTAAGGCCCCGGGGAACCACCCGGCCAA
1._RUQ_200
____CCGGGG_CCACCCGGCCAA
2._RUQ_200
_____GGGGAA_ACCC__AA
3._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
4._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
5._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
6._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
7._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
8._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
9._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
10._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
11._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
12._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
13._GC-01-075-4-11
TTAAGGCCCCGGGGAGCCACCCGGCCAA
14._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
15._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
16._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
17._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
18._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
19._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
20._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
21._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
22._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
23._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
24._GU_221_/C
TTAAGGCCCCGGGGAGCCACCCGGCCAA
25._GC-01-075-4-11
TTAAGGCCCCGGGGAG_ACCCGGCCAA
26._GU_221_/C
TTAAGGCCCCGGGGAG_ACCCGGCCAA
27._GU_221_/C
CCAAGGCCCCGGGGAACCCCCCGGCCAA
28._GC-01-075-4-11
CCAAGGCCCCGGGGAACCCCCCGGCCAA
29._GC-01-075-4-11
CCAAGGCCCCGGGGAACCCCCCGGCCAA
30._GU_221_/C
CCAAGGCCCCGGGGAACCCCCCGGCCAA
31._GC-01-75-4-11
AAAAGGGGGGCCCC_GGACCCCC_AA
32._RUQ_200
AAAAGGGGGGCCCC_GGACCCCC_AA
 293031323334353637383940  
_Input profile
AGAGAACCGGCCAATTTTAAATGGX_XX_X
1._RUQ_200
AG_AACCGGCCAATTTTAA__X_XX_X
2._RUQ_200
____GG____AA__X_XX_X
3._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
4._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
5._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
6._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
7._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
8._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
9._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
10._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
11._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
12._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
13._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
14._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
15._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
16._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
17._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
18._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
19._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
20._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
21._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
22._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
23._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
24._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
25._GC-01-075-4-11
AGGGAACCGGCCAATTTTAAATGGX_XX_X
26._GU_221_/C
AGGGAACCGGCCAATTTTAAATGGX_XX_X
27._GU_221_/C
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
28._GC-01-075-4-11
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
29._GC-01-075-4-11
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
30._GU_221_/C
GGGGAACCGGCCAATTTTAAAAGGX_XX_X
31._GC-01-75-4-11
_GGAAGGGGGGAAAAAAAAATGGX_XX_X
32._RUQ_200
_GGAAGGGGGGAAAAAAAAATGGX_XX_X

Input profile: GU_221_/C RUQ_200

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._GU_221_/C RUQ_200

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_221_/C RUQ_200

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

4._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

5._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

6._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

7._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

8._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

9._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._GU_221_/C GC-01-075-4-11

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._GU_221_/C

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._GU_221_/C

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

16._GU_221_/C

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

17._GU_221_/C

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

18._GU_221_/C

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

19._GU_221_/C

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

20._GU_221_/C

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

21._GU_221_/C

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

22._GU_221_/C

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

23._GU_221_/C

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

24._GU_221_/C

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

25._GU_221_/C GC-01-075-4-11

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._GU_221_/C

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

27._GU_221_/C

85.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

28._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._GU_221_/C GC-01-075-4-11

85.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._GU_221_/C

85.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

31._GU_221_/C GC-01-75-4-11

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

32._GU_221_/C RUQ_200

47.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25