SNP Profiles of GU 168/H   View Data

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 Key

 1234567891011121314
_Input profile
TTAAGGCTTTCCTTCCTTAAAACCGGTT
1._GC-03-023-2-12
TTAAGGCTTTCCTTCCTTAAAACCGGTT
2._RUQ_223
_AGGGCC__TT____CCAG_
3._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._RUQ_223
CCAGGGCCTTTTTTCCCCAAGGCCAGCT
8._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
19._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
21._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
22._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
23._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
24._GC-03-23-2-12
GGGGGGGGAAAAAA__AAGGGGGGGG
 1516171819202122232425262728
_Input profile
AACCTTCCGGGGGGTTCCCCTTTTCCAA
1._GC-03-023-2-12
AACCTTCCGGGGGGTTCCCCTTTTCCAA
2._RUQ_223
___CCGGGG_CCCCCCGGCCAAAG
3._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
4._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
5._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
6._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
7._RUQ_223
AAGGCCCCGGGGAACCCCCCGGCCAAAG
8._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
9._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
10._GU_168_/H
AAGGCCCCGGGGAGCCCC_GGCCAAGG
11._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
12._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
13._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
14._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
15._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
16._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
17._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
18._GU_168_/H
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
19._GC-03-023-2-12
AAGGCCCCGGGGAGCCCC_GGCCAAGG
20._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
21._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
22._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
23._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCCCGGCCAAGG
24._GC-03-23-2-12
AAGGGGGGCCCC_GGCCCCCC_AA_
 2930313233343536373839   
_Input profile
GGAACCAACCAACCTTACTTGGX_XX_XX_X
1._GC-03-023-2-12
GGAACCAACCAACCTTACTTGGX_XX_XX_X
2._RUQ_223
_AACCGGCCAATTTTAA__X_XX_XX_X
3._GC-03-023-2-12
GGAACCGGCCAATTTT_TTGGX_XX_XX_X
4._GU_168_/H
GGAACCGGCCAATTTT_TTGGX_XX_XX_X
5._GU_168_/H
GGAACCGGCCAA_TTAATTGGX_XX_XX_X
6._GC-03-023-2-12
GGAACCGGCCAA_TTAATTGGX_XX_XX_X
7._RUQ_223
AGAACCGGCCAATTTTAAATGGX_XX_XX_X
8._GU_168_/H
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
9._GC-03-023-2-12
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
10._GU_168_/H
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
11._GU_168_/H
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
12._GU_168_/H
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
13._GU_168_/H
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
14._GU_168_/H
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
15._GU_168_/H
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
16._GC-03-023-2-12
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
17._GC-03-023-2-12
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
18._GU_168_/H
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
19._GC-03-023-2-12
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
20._GC-03-023-2-12
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
21._GC-03-023-2-12
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
22._GC-03-023-2-12
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
23._GC-03-023-2-12
GGAACCGGCCAATTTTAATTGGX_XX_XX_X
24._GC-03-23-2-12
GGAAGGGGGGAAAAAAAATTGGX_XX_XX_X

Input profile: GU_168_/H

 
Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

1._GU_168_/H GC-03-023-2-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

2._GU_168_/H RUQ_223

60.4 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._GU_168_/H GC-03-023-2-12

53.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._GU_168_/H

53.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

5._GU_168_/H

53.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

6._GU_168_/H GC-03-023-2-12

53.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

7._GU_168_/H RUQ_223

53.8 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

9._GU_168_/H GC-03-023-2-12

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

10._GU_168_/H

51.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

11._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

12._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

13._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

14._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

15._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

16._GU_168_/H GC-03-023-2-12

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._GU_168_/H GC-03-023-2-12

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._GU_168_/H

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._GU_168_/H GC-03-023-2-12

51.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

20._GU_168_/H GC-03-023-2-12

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

21._GU_168_/H GC-03-023-2-12

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._GU_168_/H GC-03-023-2-12

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

23._GU_168_/H GC-03-023-2-12

52.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._GU_168_/H GC-03-23-2-12

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25