SNP Profiles of GU 168/H   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._GC-03-023-2-12
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
19._GU_168_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._RUQ_223
_AGGGCC__TT____CCAG_
21._RUQ_223
CCAGGGCCTTTTTTCCCCAAGGCCAGCT
22._GU_168_/H
TTAAGGCTTTCCTTCCTTAAAACCGGTT
23._GC-03-023-2-12
TTAAGGCTTTCCTTCCTTAAAACCGGTT
24._GC-03-23-2-12
GGGGGGGGAAAAAA__AAGGGGGGGG
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
1._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
2._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
3._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
4._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
5._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
6._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
7._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
8._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
9._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
10._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
11._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
12._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
13._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
14._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
15._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
16._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
17._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
18._GC-03-023-2-12
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
19._GU_168_/H
AAGGCCCCGGGGAGCCCCGGCCAAGGGG
20._RUQ_223
___CCGGGG_CCCCGGCCAAAG_
21._RUQ_223
AAGGCCCCGGGGAACCCCGGCCAAAGAG
22._GU_168_/H
AACCTTCCGGGGGGTTCCTTTTCCAAGG
23._GC-03-023-2-12
AACCTTCCGGGGGGTTCCTTTTCCAAGG
24._GC-03-23-2-12
AAGGGGGGCCCC_GGCCCC_AA_GG
 29303132333435363738    
_Input profile
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
1._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
2._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
3._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
4._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
5._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
6._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
7._GU_168_/H
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
8._GU_168_/H
AACCGGCCAATTTT_TTGGX_XX_XX_XX_X
9._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
10._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
11._GC-03-023-2-12
AACCGGCCAATTTT_TTGGX_XX_XX_XX_X
12._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
13._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
14._GC-03-023-2-12
AACCGGCCAA_TTAATTGGX_XX_XX_XX_X
15._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
16._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
17._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
18._GC-03-023-2-12
AACCGGCCAATTTTAATTGGX_XX_XX_XX_X
19._GU_168_/H
AACCGGCCAA_TTAATTGGX_XX_XX_XX_X
20._RUQ_223
AACCGGCCAATTTTAA__X_XX_XX_XX_X
21._RUQ_223
AACCGGCCAATTTTAAATGGX_XX_XX_XX_X
22._GU_168_/H
AACCAACCAACCTTACTTGGX_XX_XX_XX_X
23._GC-03-023-2-12
AACCAACCAACCTTACTTGGX_XX_XX_XX_X
24._GC-03-23-2-12
AAGGGGGGAAAAAAAATTGGX_XX_XX_XX_X

Input profile: GU_168_/H

 
Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

1._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

3._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

4._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

5._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

6._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

7._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

8._GU_168_/H

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

9._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

10._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._GU_168_/H GC-03-023-2-12

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._GU_168_/H GC-03-023-2-12

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

15._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

16._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

17._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

18._GU_168_/H GC-03-023-2-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

19._GU_168_/H

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

20._GU_168_/H RUQ_223

89.1 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._GU_168_/H RUQ_223

86.8 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._GU_168_/H

52.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

23._GU_168_/H GC-03-023-2-12

52.6 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._GU_168_/H GC-03-23-2-12

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25