SNP Profiles of GU 168 /H   View Data

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 Key

 1234567891011121314
_Input profile
CCAGGGCCTTCCTTTTCCCCAAGGCCAG
1._RUQ_223
_AGGGCC___TT____CCAG
2._GU_168_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
3._GU_168_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
4._GU_168_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
5._GU_168_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
6._GU_168_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
7._GU_168_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
8._GU_168_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
9._GU_168_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
10._GC-03-023-2-12
CCGGCCCCTT_TTTTCCCCAAGGCCGG
11._GU_168_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
12._GC-03-023-2-12
CCGGCCCCTT_TTTTCCCCAAGGCCGG
13._GC-03-023-2-12
CCGGCCCCTT_TTTTCCCCAAGGCCGG
14._GC-03-023-2-12
CCGGCCCCTT_TTTTCCCCAAGGCCGG
15._GC-03-023-2-12
CCGGCCCCTT_TTTTCCCCAAGGCCGG
16._GC-03-023-2-12
CCGGCCCCTT_TTTTCCCCAAGGCCGG
17._GC-03-023-2-12
CCGGCCCCTT_TTTTCCCCAAGGCCGG
18._GC-03-023-2-12
CCGGCCCCTT_TTTTCCCCAAGGCCGG
19._GC-03-023-2-12
CCGGCCCCTT_TTTTCCCCAAGGCCGG
20._GC-03-023-2-12
CCGGCCCCTT_TTTTCCCCAAGGCCGG
21._GU_168_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
22._GU_168_/H
TTAAGGCTTT_CCTTCCTTAAAACCGG
23._GC-03-023-2-12
TTAAGGCTTT_CCTTCCTTAAAACCGG
24._GC-03-23-2-12
GGGGGGGGAA_AAAA__AAGGGGGG
 1516171819202122232425262728
_Input profile
CTAAGGCCCCGGGGAACCCCCCGGCCAA
1._RUQ_223
____CCGGGG_CCCCCCGGCCAA
2._GU_168_/H
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
3._GU_168_/H
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
4._GU_168_/H
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
5._GU_168_/H
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
6._GU_168_/H
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
7._GU_168_/H
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
8._GU_168_/H
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
9._GU_168_/H
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
10._GC-03-023-2-12
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
11._GU_168_/H
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
12._GC-03-023-2-12
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
13._GC-03-023-2-12
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
14._GC-03-023-2-12
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
15._GC-03-023-2-12
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
16._GC-03-023-2-12
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
17._GC-03-023-2-12
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
18._GC-03-023-2-12
CCAAGGCCCCGGGGAGCCCC_GGCCAA
19._GC-03-023-2-12
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
20._GC-03-023-2-12
CCAAGGCCCCGGGGAGCCCCCCGGCCAA
21._GU_168_/H
CCAAGGCCCCGGGGAGCCCC_GGCCAA
22._GU_168_/H
TTAACCTTCCGGGGGGTTCCCCTTTTCC
23._GC-03-023-2-12
TTAACCTTCCGGGGGGTTCCCCTTTTCC
24._GC-03-23-2-12
GGAAGGGGGGCCCC_GGCCCCCC_AA
 293031323334353637383940  
_Input profile
AGAGAACCGGCCAATTTTAAATGGX_XX_X
1._RUQ_223
AG_AACCGGCCAATTTTAA__X_XX_X
2._GU_168_/H
GGGGAACCGGCCAATTTTAATTGGX_XX_X
3._GU_168_/H
GGGGAACCGGCCAATTTTAATTGGX_XX_X
4._GU_168_/H
GGGGAACCGGCCAATTTTAATTGGX_XX_X
5._GU_168_/H
GGGGAACCGGCCAATTTTAATTGGX_XX_X
6._GU_168_/H
GGGGAACCGGCCAATTTTAATTGGX_XX_X
7._GU_168_/H
GGGGAACCGGCCAATTTTAATTGGX_XX_X
8._GU_168_/H
GGGGAACCGGCCAATTTT_TTGGX_XX_X
9._GU_168_/H
GGGGAACCGGCCAATTTTAATTGGX_XX_X
10._GC-03-023-2-12
GGGGAACCGGCCAATTTTAATTGGX_XX_X
11._GU_168_/H
GGGGAACCGGCCAA_TTAATTGGX_XX_X
12._GC-03-023-2-12
GGGGAACCGGCCAATTTTAATTGGX_XX_X
13._GC-03-023-2-12
GGGGAACCGGCCAATTTT_TTGGX_XX_X
14._GC-03-023-2-12
GGGGAACCGGCCAATTTTAATTGGX_XX_X
15._GC-03-023-2-12
GGGGAACCGGCCAATTTTAATTGGX_XX_X
16._GC-03-023-2-12
GGGGAACCGGCCAA_TTAATTGGX_XX_X
17._GC-03-023-2-12
GGGGAACCGGCCAATTTTAATTGGX_XX_X
18._GC-03-023-2-12
GGGGAACCGGCCAATTTTAATTGGX_XX_X
19._GC-03-023-2-12
GGGGAACCGGCCAATTTTAATTGGX_XX_X
20._GC-03-023-2-12
GGGGAACCGGCCAATTTTAATTGGX_XX_X
21._GU_168_/H
GGGGAACCGGCCAATTTTAATTGGX_XX_X
22._GU_168_/H
AAGGAACCAACCAACCTTACTTGGX_XX_X
23._GC-03-023-2-12
AAGGAACCAACCAACCTTACTTGGX_XX_X
24._GC-03-23-2-12
_GGAAGGGGGGAAAAAAAATTGGX_XX_X

Input profile: GU_168_/H RUQ_223

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._GU_168_/H RUQ_223

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_168_/H

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

3._GU_168_/H

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

4._GU_168_/H

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

5._GU_168_/H

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

6._GU_168_/H

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

7._GU_168_/H

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

8._GU_168_/H

80.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

9._GU_168_/H

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._GU_168_/H GC-03-023-2-12

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

11._GU_168_/H

80.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

12._GU_168_/H GC-03-023-2-12

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._GU_168_/H GC-03-023-2-12

80.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._GU_168_/H GC-03-023-2-12

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._GU_168_/H GC-03-023-2-12

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._GU_168_/H GC-03-023-2-12

80.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

17._GU_168_/H GC-03-023-2-12

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

18._GU_168_/H GC-03-023-2-12

80.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

19._GU_168_/H GC-03-023-2-12

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

20._GU_168_/H GC-03-023-2-12

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

21._GU_168_/H

80.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

22._GU_168_/H

48.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

23._GU_168_/H GC-03-023-2-12

48.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._GU_168_/H GC-03-23-2-12

38.2 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25