SNP Profiles of GU%20147%20/H   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._RUQ_222
_GGCCCC__TT____CCGG_
19._RUQ_222
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._RUQ_222
__CC___TT_CC_GG_GG_
21._GC-01-80-4-16
GGGGGGGGAAAAAA__AAGGGGGGGG
22._RUQ_222
GGAGCCGGAAAAAA__AAGGGGAGAG
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGGGCTAACCGGCCAAGG
1._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
2._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
3._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
4._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
5._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
6._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
7._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
8._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
9._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
10._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
11._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
12._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
13._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
14._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
15._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
16._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
17._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
18._RUQ_222
___CCGGGG_CTAACCGGCCAAGG
19._RUQ_222
AAGGCCCCGGGGAACTAACCGGCCAAGG
20._RUQ_222
____GGGGAA_AACC__AA_
21._GC-01-80-4-16
AAGGGGGGCCCC_AGAACCCC_AA_
22._RUQ_222
AAGGGGGGCCCC_GGCCCCCC_AA_
 29303132333435363738    
_Input profile
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
1._GU_147_/H
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
2._GC-01-080-4-16
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
3._GC-01-080-4-16
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
4._GC-01-080-4-16
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
5._GC-01-080-4-16
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
6._GC-01-080-4-16
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
7._GC-01-080-4-16
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
8._GC-01-080-4-16
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
9._GC-01-080-4-16
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
10._GC-01-080-4-16
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
11._GU_147_/H
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
12._GU_147_/H
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
13._GU_147_/H
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
14._GU_147_/H
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
15._GU_147_/H
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
16._GU_147_/H
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
17._GU_147_/H
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
18._RUQ_222
_AACCGGCCAATTTT__X_XX_XX_XX_X
19._RUQ_222
GGAACCGGCCAATTTTATGGX_XX_XX_XX_X
20._RUQ_222
___GG______X_XX_XX_XX_X
21._GC-01-80-4-16
GGAAGGGGGGAAAAAAATGGX_XX_XX_XX_X
22._RUQ_222
GGAAGGGGGGAAAAAAATGGX_XX_XX_XX_X

Input profile: GU_147_/H

 
Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

1._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

2._GU_147_/H GC-01-080-4-16

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._GU_147_/H GC-01-080-4-16

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

4._GU_147_/H GC-01-080-4-16

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

5._GU_147_/H GC-01-080-4-16

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._GU_147_/H GC-01-080-4-16

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._GU_147_/H GC-01-080-4-16

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

8._GU_147_/H GC-01-080-4-16

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

9._GU_147_/H GC-01-080-4-16

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._GU_147_/H GC-01-080-4-16

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

13._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

14._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

15._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

16._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

17._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

18._GU_147_/H RUQ_222

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._GU_147_/H RUQ_222

97.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._GU_147_/H RUQ_222

91.7 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._GU_147_/H GC-01-80-4-16

45.5 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

22._GU_147_/H RUQ_222

42.4 %
33 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP32 38TcSNP25