SNP Profiles of GU 147 /H   View Data

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 Key

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_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GU_147_/H
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._GC-01-080-4-16
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._RUQ_222
_GGCCCC__TT____CCGG_
19._RUQ_222
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._GC-01-80-4-16
GGGGGGGGAAAAAA__AAGGGGGGGG
21._RUQ_222
GGAGCCGGAAAAAA__AAGGGGAGAG
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGGGCTAACCGGCCAAGG
1._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
2._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
3._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
4._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
5._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
6._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
7._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
8._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
9._GU_147_/H
AAGGCCCCGGGGGGCTAACCGGCCAAGG
10._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
11._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
12._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
13._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
14._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
15._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
16._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
17._GC-01-080-4-16
AAGGCCCCGGGGGGCTAACCGGCCAAGG
18._RUQ_222
___CCGGGG_CTAACCGGCCAAGG
19._RUQ_222
AAGGCCCCGGGGAACTAACCGGCCAAGG
20._GC-01-80-4-16
AAGGGGGGCCCC_AGAACCCC_AA_
21._RUQ_222
AAGGGGGGCCCC_GGCCCCCC_AA_
 2930313233343536373839   
_Input profile
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
1._GU_147_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
2._GC-01-080-4-16
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
3._GU_147_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
4._GU_147_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
5._GU_147_/H
GGAACCGGCCAATTTT_ATGGX_XX_XX_X
6._GU_147_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
7._GU_147_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
8._GU_147_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
9._GU_147_/H
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
10._GC-01-080-4-16
GGAACCGGCCAATTTT_ATGGX_XX_XX_X
11._GC-01-080-4-16
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
12._GC-01-080-4-16
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
13._GC-01-080-4-16
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
14._GC-01-080-4-16
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
15._GC-01-080-4-16
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
16._GC-01-080-4-16
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
17._GC-01-080-4-16
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
18._RUQ_222
_AACCGGCCAATTTTAA__X_XX_XX_X
19._RUQ_222
GGAACCGGCCAATTTTAAATGGX_XX_XX_X
20._GC-01-80-4-16
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X
21._RUQ_222
GGAAGGGGGGAAAAAAAAATGGX_XX_XX_X

Input profile: GU_147_/H

 
Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

2._GU_147_/H GC-01-080-4-16

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

4._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

5._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

6._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

7._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

8._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

9._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

10._GU_147_/H GC-01-080-4-16

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._GU_147_/H GC-01-080-4-16

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._GU_147_/H GC-01-080-4-16

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

13._GU_147_/H GC-01-080-4-16

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._GU_147_/H GC-01-080-4-16

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

15._GU_147_/H GC-01-080-4-16

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

16._GU_147_/H GC-01-080-4-16

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

17._GU_147_/H GC-01-080-4-16

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

18._GU_147_/H RUQ_222

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._GU_147_/H RUQ_222

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._GU_147_/H GC-01-80-4-16

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._GU_147_/H RUQ_222

44.1 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25