SNP Profiles of GU 147 /H   View Data

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 Key

 1234567891011121314
_Input profile
CCGGCCCCTTCCTTTTCCCCAAGGCCGG
1._RUQ_222
_GGCCCC___TT____CCGG
2._GU_147_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
3._GU_147_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
4._GU_147_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
5._GU_147_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
6._GU_147_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
7._GU_147_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
8._GU_147_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
9._GU_147_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
10._GC-01-080-4-16
CCGGCCCCTT_TTTTCCCCAAGGCCGG
11._GC-01-080-4-16
CCGGCCCCTT_TTTTCCCCAAGGCCGG
12._GC-01-080-4-16
CCGGCCCCTT_TTTTCCCCAAGGCCGG
13._GC-01-080-4-16
CCGGCCCCTT_TTTTCCCCAAGGCCGG
14._GC-01-080-4-16
CCGGCCCCTT_TTTTCCCCAAGGCCGG
15._GC-01-080-4-16
CCGGCCCCTT_TTTTCCCCAAGGCCGG
16._GC-01-080-4-16
CCGGCCCCTT_TTTTCCCCAAGGCCGG
17._GC-01-080-4-16
CCGGCCCCTT_TTTTCCCCAAGGCCGG
18._GC-01-080-4-16
CCGGCCCCTT_TTTTCCCCAAGGCCGG
19._GU_147_/H
CCGGCCCCTT_TTTTCCCCAAGGCCGG
20._GC-01-80-4-16
GGGGGGGGAA_AAAA__AAGGGGGG
21._RUQ_222
GGAGCCGGAACCAAAA__AAGGGGAG
 1516171819202122232425262728
_Input profile
CCAAGGCCCCGGGGAACTAACCGGCCAA
1._RUQ_222
____CCGGGG_CTAACCGGCCAA
2._GU_147_/H
CCAAGGCCCCGGGGGGCTAACCGGCCAA
3._GU_147_/H
CCAAGGCCCCGGGGGGCTAACCGGCCAA
4._GU_147_/H
CCAAGGCCCCGGGGGGCTAACCGGCCAA
5._GU_147_/H
CCAAGGCCCCGGGGGGCTAACCGGCCAA
6._GU_147_/H
CCAAGGCCCCGGGGGGCTAACCGGCCAA
7._GU_147_/H
CCAAGGCCCCGGGGGGCTAACCGGCCAA
8._GU_147_/H
CCAAGGCCCCGGGGGGCTAACCGGCCAA
9._GU_147_/H
CCAAGGCCCCGGGGGGCTAACCGGCCAA
10._GC-01-080-4-16
CCAAGGCCCCGGGGGGCTAACCGGCCAA
11._GC-01-080-4-16
CCAAGGCCCCGGGGGGCTAACCGGCCAA
12._GC-01-080-4-16
CCAAGGCCCCGGGGGGCTAACCGGCCAA
13._GC-01-080-4-16
CCAAGGCCCCGGGGGGCTAACCGGCCAA
14._GC-01-080-4-16
CCAAGGCCCCGGGGGGCTAACCGGCCAA
15._GC-01-080-4-16
CCAAGGCCCCGGGGGGCTAACCGGCCAA
16._GC-01-080-4-16
CCAAGGCCCCGGGGGGCTAACCGGCCAA
17._GC-01-080-4-16
CCAAGGCCCCGGGGGGCTAACCGGCCAA
18._GC-01-080-4-16
CCAAGGCCCCGGGGGGCTAACCGGCCAA
19._GU_147_/H
CCAAGGCCCCGGGGGGCTAACCGGCCAA
20._GC-01-80-4-16
GGAAGGGGGGCCCC_AGAACCCC_AA
21._RUQ_222
AGAAGGGGGGCCCC_GGCCCCCC_AA
 293031323334353637383940  
_Input profile
GGGGAACCGGCCAATTTTAAATGGX_XX_X
1._RUQ_222
GG_AACCGGCCAATTTTAA__X_XX_X
2._GU_147_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
3._GU_147_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
4._GU_147_/H
GGGGAACCGGCCAATTTT_ATGGX_XX_X
5._GU_147_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
6._GU_147_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
7._GU_147_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
8._GU_147_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
9._GU_147_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
10._GC-01-080-4-16
GGGGAACCGGCCAATTTT_ATGGX_XX_X
11._GC-01-080-4-16
GGGGAACCGGCCAATTTTAAATGGX_XX_X
12._GC-01-080-4-16
GGGGAACCGGCCAATTTTAAATGGX_XX_X
13._GC-01-080-4-16
GGGGAACCGGCCAATTTTAAATGGX_XX_X
14._GC-01-080-4-16
GGGGAACCGGCCAATTTTAAATGGX_XX_X
15._GC-01-080-4-16
GGGGAACCGGCCAATTTTAAATGGX_XX_X
16._GC-01-080-4-16
GGGGAACCGGCCAATTTTAAATGGX_XX_X
17._GC-01-080-4-16
GGGGAACCGGCCAATTTTAAATGGX_XX_X
18._GC-01-080-4-16
GGGGAACCGGCCAATTTTAAATGGX_XX_X
19._GU_147_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
20._GC-01-80-4-16
_GGAAGGGGGGAAAAAAAAATGGX_XX_X
21._RUQ_222
_GGAAGGGGGGAAAAAAAAATGGX_XX_X

Input profile: GU_147_/H RUQ_222

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._GU_147_/H RUQ_222

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_147_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

3._GU_147_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

4._GU_147_/H

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

5._GU_147_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

6._GU_147_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

7._GU_147_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

8._GU_147_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

9._GU_147_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._GU_147_/H GC-01-080-4-16

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

12._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

14._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

17._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._GU_147_/H GC-01-080-4-16

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

19._GU_147_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

20._GU_147_/H GC-01-80-4-16

47.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._GU_147_/H RUQ_222

45.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25