SNP Profiles of GU%20136/H   View Data

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 Key

 1234567891011121314
_Input profile
CCGGGGCCTTCCTTTTCCCCAAGGCCAA
1._RUQ_221
_GGGGCC___TT____CCAA
2._RUQ_221
__GG____TT_CC_GG_AA
3._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
4._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
5._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
6._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
7._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
8._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
9._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
10._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
11._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
12._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
13._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
14._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
15._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
16._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
17._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
18._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
19._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
20._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
21._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
22._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
23._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
24._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
25._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
26._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
27._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
28._GU_136_/H
CCGGGGCCTT_TT_CCCCAAGGCCAA
29._GC-03-019-2-08
CCGGGGCCTT_TT_CCCCAAGGCCAA
30._GC-03-019-2-08
CCGGGGCCTT_TTTTCCCCAAGGCCAA
31._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
32._GU_136_/H
CCGGGGCCTT_TTTTCCCCAAGGCCAA
33._GC-03-19-2-8
GGGGCCGGAAACAAAA__AAGGGGAA
 1516171819202122232425262728
_Input profile
CCAAGGCCCCGGGGAACCCCCCGGCCAA
1._RUQ_221
____CCGGGG_CCCCCCGGCCAA
2._RUQ_221
_____GGGGAA_CCCC__AA
3._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
4._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
5._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
6._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
7._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
8._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
9._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
10._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
11._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
12._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
13._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
14._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
15._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
16._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
17._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
18._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
19._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
20._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
21._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
22._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
23._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
24._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
25._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
26._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
27._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
28._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
29._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
30._GC-03-019-2-08
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
31._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
32._GU_136_/H
CCAAGGCCCCGGGGGGCCCCCCGGCCAA
33._GC-03-19-2-8
GGAAGGGGGGCCCC_GGCCCCCC_AA
 293031323334353637383940  
_Input profile
GGGGAACCGGCCAATTTTAAATGGX_XX_X
1._RUQ_221
GG_AACCGGCCAATTTTAA__X_XX_X
2._RUQ_221
____GG____AA__X_XX_X
3._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
4._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
5._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
6._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
7._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
8._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
9._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
10._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
11._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
12._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
13._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
14._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
15._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
16._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
17._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
18._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
19._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
20._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
21._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
22._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
23._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
24._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
25._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
26._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
27._GC-03-019-2-08
GG_AACCGGCCAATTTTAAATGGX_XX_X
28._GU_136_/H
GGGGAACCGGCCAATTTTAAATGGX_XX_X
29._GC-03-019-2-08
GGGGAACCGGCCAATTTTAAATGGX_XX_X
30._GC-03-019-2-08
GGGGAACCGGCCAATT_AAATGGX_XX_X
31._GU_136_/H
GGGGAACCGGCCAATT_AAATGGX_XX_X
32._GU_136_/H
GG_AACCGGCCAATTTTAAATGGX_XX_X
33._GC-03-19-2-8
_GGAAGGGGGGAAAAAAAAATGGX_XX_X

Input profile: GU_136_/H RUQ_221

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._GU_136_/H RUQ_221

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_136_/H RUQ_221

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

10._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

11._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

12._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

13._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

14._GU_136_/H GC-03-019-2-08

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

15._GU_136_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._GU_136_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

17._GU_136_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

18._GU_136_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

19._GU_136_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

20._GU_136_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

21._GU_136_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

22._GU_136_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

23._GU_136_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

24._GU_136_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

25._GU_136_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

26._GU_136_/H

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

27._GU_136_/H GC-03-019-2-08

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

28._GU_136_/H

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

29._GU_136_/H GC-03-019-2-08

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

30._GU_136_/H GC-03-019-2-08

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

31._GU_136_/H

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

32._GU_136_/H

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

33._GU_136_/H GC-03-19-2-8

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25